View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_low_44 (Length: 232)
Name: NF19856_low_44
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 14326847 - 14327035
Alignment:
| Q |
19 |
aaaagaagatcaaacatgcatagtaaagatgtcatgtttatttctttatacaaaaacaacataatctcttgagtcttgactacccgattaagctctagct |
118 |
Q |
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| T |
14326847 |
aaaagaagatcaaacatgcatagtaaagatgtcatgtttatttctttatacaaaaacaacataatc-------tcttgactacccgattaagctctagct |
14326939 |
T |
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| Q |
119 |
agattaacaaaggaaacaactaaaacatagaaaacactnnnnnnnntaagaaaaagttacataacataaccaaatattctagctagctagcactat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14326940 |
agattaacaaaggaaacaactaaaacatagaaaacactaaaaaaaataagaaaaagttacataacataaccaaatattctagctagctagcactat |
14327035 |
T |
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