View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19856_low_47 (Length: 226)

Name: NF19856_low_47
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19856_low_47
NF19856_low_47
[»] chr6 (1 HSPs)
chr6 (13-211)||(31274569-31274775)
[»] chr4 (2 HSPs)
chr4 (13-168)||(20123616-20123770)
chr4 (13-160)||(39236065-39236211)
[»] chr3 (1 HSPs)
chr3 (21-144)||(23369669-23369791)
[»] chr1 (1 HSPs)
chr1 (85-168)||(26215968-26216052)
[»] chr7 (1 HSPs)
chr7 (13-163)||(8736826-8736974)
[»] scaffold0152 (2 HSPs)
scaffold0152 (65-168)||(1756-1858)
scaffold0152 (65-168)||(6003-6105)
[»] chr5 (1 HSPs)
chr5 (65-168)||(21198000-21198102)


Alignment Details
Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 31274775 - 31274569
Alignment:
Q  13 gagaagaaatagatgaataacattctcattaattgatgaaataatgaaggagtacaacttataaagaagctaagaggtgtactatattacaatgagctga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||    
T  31274775 gagaagaaatagatgaataacattctcattaattgatgaaataatgaaggagtacaatttatatagaagctaagaggtatactatattacaatgagctga 31274676  T
Q  113 agcatagagtattggaactcttctaactaactgtaaacaaactaaagctaggtaacgt--------cgttactgctgtaactactccttattctcttgtt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |         ||||||| ||||||||||||| |||||||||||    
T  31274675 agcatagagtattggaactcttctaactaactgtaaacaaactaaagttaggtaacttgctacgcaagttactgttgtaactactcctcattctcttgtt 31274576  T
Q  205 ttccttc 211  Q
    |||||||    
T  31274575 ttccttc 31274569  T

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Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 13 - 168
Target Start/End: Complemental strand, 20123770 - 20123616
Alignment:
Q  13 gagaagaaatagatgaataacattctcattaattgatgaaataatgaaggagtacaacttataaagaagctaagaggtgtactatattacaatgagctga 112  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| |||||||||| |||| ||||||||||| |||||| |    
T  20123770 gagaagaaatagatgaataatattctcattaattgatgaa-taatgaaggagtaaaacttatatagaagctaagtggtgcactatattacagtgagctta 20123672  T
Q  113 agcatagagtattggaactcttctaactaactgtaaacaaactaaagctaggtaac 168  Q
    ||||||||||||| ||||||||||||||||||| |||| |||||||||||| ||||    
T  20123671 agcatagagtattagaactcttctaactaactgaaaactaactaaagctagataac 20123616  T

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Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 39236211 - 39236065
Alignment:
Q  13 gagaagaaatagatgaataacattctcattaattgatgaaataatgaaggagtacaacttataaagaagctaagaggtgtactatattacaatgagctga 112  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||     
T  39236211 gagaagaaatagatgaataacattctcattaattgatgaa-taatgaaggagtacaacttatatagaagctaagtggtgtactatattacaatgaggtgt 39236113  T
Q  113 agcatagagtattggaactcttctaactaactgtaaacaaactaaagc 160  Q
    ||||||||||||| |||||||||||||||| ||  ||| |||||||||    
T  39236112 agcatagagtattagaactcttctaactaattgataactaactaaagc 39236065  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 23369669 - 23369791
Alignment:
Q  21 atagatgaataacattctcattaattgatgaaataatgaaggagtacaacttataaagaagctaagaggtgtactatattacaatgagctgaagcataga 120  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| |||||||||| |||||||||| | |||||||||    
T  23369669 atagatgaagaacattctcattaattgatgaa-taatgaaggagtacaacttatatagaaactaagtggtgtactatgttacaatgaggtcaagcataga 23369767  T
Q  121 gtattggaactcttctaactaact 144  Q
    ||||| |||||| |||||||||||    
T  23369768 gtattagaactcatctaactaact 23369791  T

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Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 26216052 - 26215968
Alignment:
Q  85 agaggtgtactatatt-acaatgagctgaagcatagagtattggaactcttctaactaactgtaaacaaactaaagctaggtaac 168  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||  |||| |||||||||||||||||    
T  26216052 agaggtgtactatatttacaatgagctgaagcatagagtattagaactcttctaactaactagaaactaactaaagctaggtaac 26215968  T

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Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 8736826 - 8736974
Alignment:
Q  13 gagaagaaatagatgaataacattctcattaattgatgaaataatgaaggagtacaacttataaagaagctaagaggtgtactatattacaatgagctga 112  Q
    |||||||||||||||||||| |||||||||||||||||||  | || | || ||||||||||| |||  ||||| ||||||||| |||||||||||        
T  8736826 gagaagaaatagatgaataatattctcattaattgatgaatgagtgta-gattacaacttatatagattctaagtggtgtactacattacaatgaggcat 8736924  T
Q  113 agcatagagtattggaactcttctaactaactgtaaacaaactaaagctag 163  Q
    | ||||||||| |  |||||||||||||||||| |||| ||||||||||||    
T  8736925 aacatagagtagtaaaactcttctaactaactg-aaaccaactaaagctag 8736974  T

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Target: scaffold0152 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 1756 - 1858
Alignment:
Q  65 tacaacttataaagaagctaagaggtgtactatattacaatgagctgaagcatagagtattggaactcttctaactaactgtaaacaaactaaagctagg 164  Q
    ||||||||||| ||   |||||||||| ||||||||||||||||    |||||||||||||  ||||||| |||||||| | |||| ||||||||||||     
T  1756 tacaacttatatagcctctaagaggtgcactatattacaatgagacatagcatagagtattaaaactcttgtaactaacag-aaactaactaaagctaga 1854  T
Q  165 taac 168  Q
    ||||    
T  1855 taac 1858  T

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Target: scaffold0152; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 6003 - 6105
Alignment:
Q  65 tacaacttataaagaagctaagaggtgtactatattacaatgagctgaagcatagagtattggaactcttctaactaactgtaaacaaactaaagctagg 164  Q
    ||||||||||| ||   |||||||||| ||||||||||||||||    |||||||||||||  ||||||| |||||||| | |||| ||||||||||||     
T  6003 tacaacttatatagcctctaagaggtgcactatattacaatgagacatagcatagagtattaaaactcttgtaactaacag-aaactaactaaagctaga 6101  T
Q  165 taac 168  Q
    ||||    
T  6102 taac 6105  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 21198000 - 21198102
Alignment:
Q  65 tacaacttataaagaagctaagaggtgtactatattacaatgagctgaagcatagagtattggaactcttctaactaactgtaaacaaactaaagctagg 164  Q
    ||||||||||| ||   |||||||||| ||||||||||||||||    |||||||||||||  ||||||| |||||||| | |||| ||||||||||||     
T  21198000 tacaacttatatagcctctaagaggtgcactatattacaatgagacatagcatagagtattaaaactcttgtaactaacag-aaactaactaaagctaga 21198098  T
Q  165 taac 168  Q
    ||||    
T  21198099 taac 21198102  T

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