View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19856_low_5 (Length: 544)
Name: NF19856_low_5
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_low_5 |
 | |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 16 - 529
Target Start/End: Complemental strand, 33951028 - 33950530
Alignment:
| Q |
16 |
aacttgctaaatgctatatccaacccaacagtgaattttggattttcaggaacatcgaaaggacgcttaaaaagttgtccatcttcattgaatttgtgta |
115 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
33951028 |
aacttgctaaatggtatatccaacccaacagtgaatttttgattttcaggaacattgaaaggacgcttgaaaagttgtccatcttcattgaatt------ |
33950935 |
T |
|
| Q |
116 |
caaaattttcatggatgagaagctcaagaatttctctggccttataaagcgtctcttcaacatcatttacagtaagagattggttctcctcaacaacata |
215 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33950934 |
---------catggttgagaagctcaagaatttctctggtcttataaagcgtctcttcaacatcatttacagtaagagattggttctcctcaacaacata |
33950844 |
T |
|
| Q |
216 |
gccataggaatcattctcagaagaacatttgcatgcactttctcctgcatcattttcttctatcagactatttatttcttctctggggtgatccaaatga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33950843 |
gccataggaatcattctcagaagaacatgtacatgcactttctcctgcatcattttcttctatcagactatttatttcttctctggggtgatccaaatga |
33950744 |
T |
|
| Q |
316 |
tcattgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaactttggttcttttgtgctttttgaagaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33950743 |
tcattgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaactttggttcttttgtgctttttgaagaa |
33950644 |
T |
|
| Q |
416 |
tttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactcatgaatttgagattccttcttctgtt |
515 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33950643 |
tttgagatattttgttcaagacatcattaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactcatgaatttgagattccttcttctgtt |
33950544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 525
Target Start/End: Complemental strand, 33990513 - 33990013
Alignment:
| Q |
16 |
aacttgctaaatgctatatccaacccaacagtgaattttggattttcaggaacatcgaaaggacgcttaaaaagttgtccatcttcattgaatttgtgta |
115 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || || | ||||||||||||||||| |
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| T |
33990513 |
aacttgctaaatggtatatccaacccaacagtgaattttggattttcaggaacatcgaaaggacgcttgaaaggtggtttagcttcattgaatttgtgtt |
33990414 |
T |
|
| Q |
116 |
caaaattttcatggatgagaagctcaagaatttctctggccttataaagcgtctcttcaacatcatttacagtaagagattggttctcctcaacaacata |
215 |
Q |
| |
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||||| |||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
33990413 |
caaaagtttcatagttgagaagctcaagaatttctctggccttataaagtgtctcttcaacatcatttacaataagagattggttctcatcaacaac--- |
33990317 |
T |
|
| Q |
216 |
gccataggaatcattctcagaagaacatttgcatgcactttctcctgcatcattttcttctatcagactatttatttcttctctggggtgatccaaatga |
315 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| | || |||||||||||||| ||||||||||| |
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| T |
33990316 |
---ataggaatcattctcagaagaacatttgcatgcactttcttctgcatcattttcttctaatagagtcttgatttcttctctgggatgatccaaatgt |
33990220 |
T |
|
| Q |
316 |
tcattgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaactttggttcttttgtgctttttgaagaa |
415 |
Q |
| |
|
||||||||||||||||| ||||| || || ||| ||||||||| |||||| ||||||| || |||||| |||||||| |||| ||||| ||| || | |
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| T |
33990219 |
tcattgtattgctttatgtcttgaaccacaagagttaaatccttcaagattgacctcaacaattgccttgcactttggtgctttcgtgctgtttcaacta |
33990120 |
T |
|
| Q |
416 |
tttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgta---gcgctactcatgaatttgagattccttcttct |
512 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |
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| T |
33990119 |
tttgagatattttgttcaagacatca------tgaaatcttgttgtaagggtaataatatgtgtagtggcgctactcatgaatttgagattccttcctct |
33990026 |
T |
|
| Q |
513 |
gtttttgcctgtc |
525 |
Q |
| |
|
| ||||||||||| |
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|
| T |
33990025 |
gcttttgcctgtc |
33990013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 120 - 360
Target Start/End: Complemental strand, 33959580 - 33959346
Alignment:
| Q |
120 |
attttcatggatgagaagctcaagaatttctctggccttataaagcgtctcttcaacatcatttacagtaagagattggttctcctcaacaacatagcca |
219 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||| | ||||||||| || |||||||||||||||||| |||||||||||||||| |||||||||||| |
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|
| T |
33959580 |
attttcgtggttgagaagctcaagaatttctcttggcttataaagtgtttcttcaacatcatttacaataagagattggttctcatcaacaacatag--- |
33959484 |
T |
|
| Q |
220 |
taggaatcattctcagaagaacatttgcatgcactttctcctgcatcattttcttctatcagactatttatttcttctctggggtgatccaaatgatcat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
33959483 |
---gaatcattctcagaagaacatttgcatgcactttctcctgcatcattttcttctattagactatttatttcctctctggggtgatccaaatgatcat |
33959387 |
T |
|
| Q |
320 |
tgtattgctttatatcttgtacaacgggagataaatccttt |
360 |
Q |
| |
|
||||||||||||| ||||| || || ||||||||||||||| |
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| T |
33959386 |
tgtattgctttatgtcttgaaccacaggagataaatccttt |
33959346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 120 - 499
Target Start/End: Complemental strand, 33973582 - 33973227
Alignment:
| Q |
120 |
attttcatggatgagaagctcaagaatttctctggccttataaagcgtctcttcaacatcatttacagtaagagattggttctcctcaacaacatagcca |
219 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||||||||||||||| |||||||| ||| |
|
|
| T |
33973582 |
attttcgtggttgagaagctcaagaatttctctggccttgtaaagtgtctcttcgacatcatttacaataagagattggttctcatcaacaacgtag--- |
33973486 |
T |
|
| Q |
220 |
taggaatcattctcagaagaacatttgcatgcactttctcctgcatcattttcttctatcagactatttatttcttctctggggtgatccaaatgatcat |
319 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| || |||| |
|
|
| T |
33973485 |
---gaatcattctcaaaagaagatttgcatgcactttct---------------tctatcaaactatttatttcttctctgggttgatccaagtgttcat |
33973404 |
T |
|
| Q |
320 |
tgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaactttggttcttttgtgctttttgaagaatttg |
419 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||||| ||| || |||| |
|
|
| T |
33973403 |
tgtaatgctttatatcttgtacaacgggagataaatcctttaagattaacctaaacaatagccttgaactttggttctttcgtgctgtttcaactatttc |
33973304 |
T |
|
| Q |
420 |
agatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgt---gtagcgctactcatgaatttga |
499 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||| ||| || ||||||||||||||||||| |
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|
| T |
33973303 |
agatattttgttcaagacatca------ttaaatcttgttgtaagggtaataatatgtgtcgtggcgctactcatgaatttga |
33973227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 396 - 498
Target Start/End: Complemental strand, 33959349 - 33959247
Alignment:
| Q |
396 |
cttttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactcatgaat |
495 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33959349 |
ctttcgtgctttttgaagtatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactcatgaat |
33959250 |
T |
|
| Q |
496 |
ttg |
498 |
Q |
| |
|
||| |
|
|
| T |
33959249 |
ttg |
33959247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 33973623 - 33973577
Alignment:
| Q |
16 |
aacttgctaaatgctatatccaacccaacagtgaattttggattttc |
62 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33973623 |
aacttgctaaatggtatatccaacccaacagtgaattttggattttc |
33973577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 10544 - 10341
Alignment:
| Q |
16 |
aacttgctaaatgctatatccaacccaacagtgaattttggattttcaggaacatcgaaaggacgcttaaaaa---gttgtccatcttcattgaatttgt |
112 |
Q |
| |
|
||||||||||||| |||||| | ||||||| |||||| ||||||||| |||||| | ||||||| ||| || | || |||||| |||||| ||||| | |
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|
| T |
10544 |
aacttgctaaatggtatatcaatcccaacaatgaattctggattttctggaacaccaaaaggacccttgaatattggtggtccattttcattaaatttct |
10445 |
T |
|
| Q |
113 |
gtacaaaattttcatggatgagaagctcaagaatttctctggccttataaagcgtctcttcaacatcatttacagtaagagattggttctcctcaacaac |
212 |
Q |
| |
|
|| |||||||||| | | | ||||| |||||||||||||||||||| ||||| ||||||| |||||||||||| |||||||||||||| || ||||| || |
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|
| T |
10444 |
gttcaaaattttccttgttaagaagttcaagaatttctctggccttgtaaagtgtctctttaacatcatttaccgtaagagattggttatcatcaacgac |
10345 |
T |
|
| Q |
213 |
atag |
216 |
Q |
| |
|
|||| |
|
|
| T |
10344 |
atag |
10341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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