View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_low_50 (Length: 219)
Name: NF19856_low_50
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_low_50 |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 28149075 - 28148903
Alignment:
| Q |
20 |
tgatcgttcattcatcaactcctgtaacaagaacataagcattaatgatcttcagctattaattgcatcaattaaatatctaactcaattcaaacatggc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28149075 |
tgatcgttcattcatcaactcctgtaacaagaacataggcattaatgatcttcagctattaattgcatcaattaaatatctaactcaattcaaacatgga |
28148976 |
T |
|
| Q |
120 |
atagaaatcacttttaagtttgttggtaattctaaatcaggaacattttcaataagttcattctccgtctgtg |
192 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28148975 |
ctagaaatcacttttaagtttgttggtatttctaaatcaggagcattttcaataagttcattctccgtctgtg |
28148903 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 28184942 - 28184774
Alignment:
| Q |
20 |
tgatcgttcattcatcaactcctgtaacaagaacataagcattaatgatcttcagctattaattgcatcaattaaatatctaactcaattcaaacatggc |
119 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||| |||||| |||||| || || ||||||| |
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| T |
28184942 |
tgattgttcattcatcaactcctgtaacaagaacagaagcaataatgatcttcagctattaattacatccattaaaattctaacgcagtt-tgacatggc |
28184844 |
T |
|
| Q |
120 |
atagaaatcacttttaagtttgttggtaattctaaatcaggaacattttcaataagttcattctccgtct |
189 |
Q |
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| |||||||||||| | |||||||||| ||||||||||||||||||||| | |||||||| ||| |||| |
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| T |
28184843 |
ctggaaatcacttttgaatttgttggtatttctaaatcaggaacattttccacaagttcatgctctgtct |
28184774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 28509870 - 28510033
Alignment:
| Q |
25 |
gttcattcatcaactcctgtaacaagaacataagcattaatgatcttcagctattaattgcatcaattaaatatctaactcaattcaaacatggcataga |
124 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||| || |||||| ||||| ||||||| | || |
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| T |
28509870 |
gttcattcatcaactcctgtaacaagcacataagcattaattatcttcagctattaattacatccattcaaattctaacacaatt-tgacatggcctgga |
28509968 |
T |
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| Q |
125 |
aatcacttttaagtttgttggtaattctaaatcaggaacattttcaataagttcattctccgtct |
189 |
Q |
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|||||||||| | |||||||||| ||||||||||||||||||||| | |||||||| ||| |||| |
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| T |
28509969 |
aatcacttttgaatttgttggtatttctaaatcaggaacattttccacaagttcatgctctgtct |
28510033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 28160385 - 28160222
Alignment:
| Q |
25 |
gttcattcatcaactcctgtaacaagaacataagcattaatgatcttcagctattaattgcatcaattaaatatctaactcaattcaaacatggcataga |
124 |
Q |
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|
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||| |||||| |||||| || || ||||||| | || |
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| T |
28160385 |
gttcattcatcaactcctgtaacaagaacagaagcaataatgatcttcagctattaattacatccattaaaattctaacgcagtt-tgacatggcctgga |
28160287 |
T |
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| Q |
125 |
aatcacttttaagtttgttggtaattctaaatcaggaacattttcaataagttcattctccgtct |
189 |
Q |
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|||||||||| | |||||||||| ||||||||| ||||||||||| | |||||||| ||| |||| |
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| T |
28160286 |
aatcacttttgaatttgttggtatttctaaatcgggaacattttccacaagttcatgctctgtct |
28160222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 29 - 180
Target Start/End: Original strand, 28480691 - 28480841
Alignment:
| Q |
29 |
attcatcaactcctgtaacaagaacataagcattaatgatcttcagctattaattgcatcaattaaatatctaactcaattcaaacatggcatagaaatc |
128 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||| || |||||| ||||| ||||||| | |||||| |
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| T |
28480691 |
attcatcaactcctgtaacaagcacataagcattaattatcttcagctattaattacatccattcaaattctaacacaatt-tgacatggcctggaaatc |
28480789 |
T |
|
| Q |
129 |
acttttaagtttgttggtaattctaaatcaggaacattttcaataagttcat |
180 |
Q |
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|||||| | |||||||||| ||||||||||| ||||||||| | |||||||| |
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| T |
28480790 |
acttttgaatttgttggtatttctaaatcagtaacattttccacaagttcat |
28480841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 28082875 - 28082712
Alignment:
| Q |
25 |
gttcattcatcaactcctgtaacaagaacataagcattaatgatcttcagctattaattgcatcaattaaatatctaactcaattcaaacatggcataga |
124 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||| |||||||||| ||| || |||| |||||| ||||| |||||| | |||||| | || |
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| T |
28082875 |
gttcattcatcaactcctgttacaagaacagaagcattaacgatcttcagcgattcataacatccattaaaattctaaggcaattcga-catggcctgga |
28082777 |
T |
|
| Q |
125 |
aatcacttttaagtttgttggtaattctaaatcaggaacattttcaataagttcattctccgtct |
189 |
Q |
| |
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|||||||||| | |||||||||| ||||||||||||||||||||| | |||||||| ||| |||| |
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| T |
28082776 |
aatcacttttgaatttgttggtatttctaaatcaggaacattttccacaagttcatgctctgtct |
28082712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 28134778 - 28134715
Alignment:
| Q |
20 |
tgatcgttcattcatcaactcctgtaacaagaacataagcattaatgatcttcagctattaatt |
83 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
28134778 |
tgattgttcattcatcaactcctgtaacaagaacataagcattaatgatcttaagctattaatt |
28134715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 184
Target Start/End: Complemental strand, 28054536 - 28054394
Alignment:
| Q |
41 |
ctgtaacaagaacataagcattaatgatcttcagctattaattgcatcaattaaatatctaactcaattcaaacatggcatagaaatcacttttaagttt |
140 |
Q |
| |
|
|||||| ||||||| |||| |||| ||||||| |||||||||| |||| |||||||| |||| |||| |||||| | |||| |||| | ||||| |
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| T |
28054536 |
ctgtaataagaacaaaagctttaacgatcttccgctattaattacatccattaaataactaatggaattttc-catggcctgcaaattacttctgagttt |
28054438 |
T |
|
| Q |
141 |
gttggtaattctaaatcaggaacattttcaataagttcattctc |
184 |
Q |
| |
|
||||||| || ||||| |||||||||||||||||||||||||| |
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| T |
28054437 |
gttggtatttttaaatatggaacattttcaataagttcattctc |
28054394 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 184
Target Start/End: Complemental strand, 28064961 - 28064819
Alignment:
| Q |
41 |
ctgtaacaagaacataagcattaatgatcttcagctattaattgcatcaattaaatatctaactcaattcaaacatggcatagaaatcacttttaagttt |
140 |
Q |
| |
|
|||||| ||||||| |||| |||| ||||||| |||||||||| |||| |||||||| |||| |||| |||||| | |||| |||| | ||||| |
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|
| T |
28064961 |
ctgtaataagaacaaaagctttaacgatcttccgctattaattacatccattaaataactaatggaattttc-catggcctgcaaattacttctgagttt |
28064863 |
T |
|
| Q |
141 |
gttggtaattctaaatcaggaacattttcaataagttcattctc |
184 |
Q |
| |
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||||||| || ||||| |||||||||||||||||||||||||| |
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|
| T |
28064862 |
gttggtatttttaaatatggaacattttcaataagttcattctc |
28064819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 26128685 - 26128744
Alignment:
| Q |
25 |
gttcattcatcaactcctgtaacaagaacataagcattaatgatcttcagctattaattg |
84 |
Q |
| |
|
|||||||||| ||||||||||||||||| | | |||||| ||||||| ||| |||||||| |
|
|
| T |
26128685 |
gttcattcattaactcctgtaacaagaatagatgcattagtgatcttgagcgattaattg |
26128744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 26178734 - 26178793
Alignment:
| Q |
25 |
gttcattcatcaactcctgtaacaagaacataagcattaatgatcttcagctattaattg |
84 |
Q |
| |
|
|||||||||| ||||||||||||||||| | | |||||| ||||||| ||| |||||||| |
|
|
| T |
26178734 |
gttcattcattaactcctgtaacaagaatagatgcattagtgatcttgagcgattaattg |
26178793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 8693008 - 8693077
Alignment:
| Q |
25 |
gttcattcatcaactcctgtaacaagaacataagcattaatgatcttcagctattaattgcatcaattaa |
94 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| |
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| T |
8693008 |
gttcattcatcaattcctgtaacaagaacagaagcattaatgatcttcacctattaattacatcaattaa |
8693077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 18489 - 18416
Alignment:
| Q |
26 |
ttcattcatcaactcctgtaacaagaacataagcattaatgatcttcagctattaattgcatcaattaaatatctaa |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||| ||||||||||||| |
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|
| T |
18489 |
ttcattcatcaactcctgtaacaagaacataagcattaatgatc---aaatattaattacatccattaaatatctaa |
18416 |
T |
|
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