View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_low_6 (Length: 513)
Name: NF19856_low_6
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 22 - 504
Target Start/End: Original strand, 2653495 - 2653972
Alignment:
| Q |
22 |
gacatctttgatattaagtgtgctttgatgtccgacatacatcagtgttcaacattcgtatgacactcatataatgcatgtcaaacaagtgttttaaaaa |
121 |
Q |
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| T |
2653495 |
gacatctttgatattaagcatgctttgatgtccgacatacgtcagtgttcaacatccgtatgacactcatataatacatgtcaaacaagtgtttcaaaaa |
2653594 |
T |
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| Q |
122 |
gaaaacaannnnnnnnnnnnnnnnnngatacacttttactctcagacattcctatggggcttaaaactgtgtcgaagtagtgactagtgatggtcaatga |
221 |
Q |
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| T |
2653595 |
gaaaacaaattttttttttttgttttgatacacttttactcttagacattcctatggcgcttaaaactgtgtcgaagtagtga-------tggtcaatga |
2653687 |
T |
|
| Q |
222 |
agaaattgaagatattaaattcaatatcatcaannnnnnnnnnnnnnnnnnnggtatagtagatgggatgaatgaggtgaaaaattgtcatgtgttgttt |
321 |
Q |
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| T |
2653688 |
ggaaattgaagatattaaattcaatatcatcaatttttattttttattttttggtatagtagatgggatgaatgaggtgaaaaattgtcatgtgttgttt |
2653787 |
T |
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| Q |
322 |
aagaactttgtaccatagggctcaatttagatattttatcgaaaatattcatatcttacttaattatataaataaaaatgtcctatatttttaaaattgc |
421 |
Q |
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| T |
2653788 |
aagaactttgtaccaaatggctcaatttagatattttatcgaaaatattcatatcttacttaattatataaatataaatgtcctatatttttaaaattgc |
2653887 |
T |
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| Q |
422 |
aatatagacatgt--gtgtctatgtttatgtcggggttcatacttcatagctcaaaatcaagaaaactacatacttgagtataat |
504 |
Q |
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| T |
2653888 |
aatatagacatgtccgtggctatgtttatgtcggggttcatacttcatagctcaaaaccaagaaaactacatactagagtataat |
2653972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 352
Target Start/End: Complemental strand, 5998468 - 5998388
Alignment:
| Q |
275 |
gtatagtagatg---ggatgaatgaggtgaaaaattgtcatgtgttgtttaagaactttgtaccatagggctcaatttaga |
352 |
Q |
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| T |
5998468 |
gtatagtagatgaatggatggatgaggtgaaaatttgttatattttgtttaataactttgtaccaaatggctcaatttaga |
5998388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 6091078 - 6091042
Alignment:
| Q |
275 |
gtatagtagatgggatgaatgaggtgaaaaattgtcat |
312 |
Q |
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| T |
6091078 |
gtatagtagatgg-atgaatgaggtgaaaaattgtcat |
6091042 |
T |
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