View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_low_8 (Length: 428)
Name: NF19856_low_8
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 29033441 - 29033054
Alignment:
| Q |
18 |
caactaattaaactctaactgaggacttaatcaaaggcataaaagtacccaaaatttggtcctctaagttaacaagcttatctaaacttaaaacattaat |
117 |
Q |
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| T |
29033441 |
caactaattaaactctaactgaggacttaatcaaaggcataaaagtacctaaaatttggtcctctaagttaactagcttatctaaacttaaaacattaat |
29033342 |
T |
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| Q |
118 |
atagattaattaagttagacattttgcaacttaactgcaaaaagaactacaaagttcaggatagtaaaaaacgtcttccataatagagcattctcctaca |
217 |
Q |
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| T |
29033341 |
atagattaattaagttagacattttgcaacttagctgcaaaaagaactacaaa---------------aaacgtcttccatgatagagcattctcctaca |
29033257 |
T |
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| Q |
218 |
ggatgggtttccatttccccaaaaaacataccctcatttgtgttaataaagttaaacccattgttaatggtttcaaattgttgcatgggaaaaccttgtt |
317 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29033256 |
tgatggttttccatttccccaaaaaacataccctcattagtgttaataaagttaaacccattgttaatggtttcaaattgttgcatgggaaaaccttgtt |
29033157 |
T |
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| Q |
318 |
gatcaaaagagacagttccaaaagtaccctccaacataggaaccatgttatgagatattggctgagaaattgaaccaaaactatttgttttcgccttctt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29033156 |
gatcaaaagagacagttccaaaagtaccctccaacataggaaccatgttatgagatattggctgagaaattgaaccaaaactatttgttttcaccttctt |
29033057 |
T |
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