View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_low_9 (Length: 418)
Name: NF19856_low_9
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 29231243 - 29230841
Alignment:
| Q |
1 |
aattagtgtttatcagaactatgtaatgaaaaagttaaaaggaaagaaaatacagttatatcgatatatagaacctccattaagccaacaaataaaaaga |
100 |
Q |
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| T |
29231243 |
aattagtgtttatcagaactatgtaatgaaaaagttaaaaggaaagaaaatgcagttatatcgatatatagaacctctattaagccaacaaataaaaaga |
29231144 |
T |
|
| Q |
101 |
tgaaaaatatgagaagtatttagaaacatgtgatattaataatatgaagatctttactttgatcaataattatggttctcagtcgatagatatgcaactt |
200 |
Q |
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| T |
29231143 |
tgaaaaatatgagaagtatttagaaacatgtgatattaataatatgaagatctttactttgatcaataattatggttctcagtcgatagatatgcaactt |
29231044 |
T |
|
| Q |
201 |
acccaacatgcttacagttgg-aagatcgtaagggtaaaccctaaatatttgcatactccacaagtttgatgttttccaccatgacatcaaacacaaact |
299 |
Q |
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| T |
29231043 |
acccaacatgcttacagttggaaagatcataagggtaaaccctaaatatttgcatactccacaagtttgatgttttccaccatgacatcaaacacaaact |
29230944 |
T |
|
| Q |
300 |
aaaatataatgggggaattacataagtaaacaagatatatgatatttcatttatttaatacattacagacatagaaagatggaaacaacatgtgcacaca |
399 |
Q |
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| T |
29230943 |
aaaatataatgggggaattacataagtaaacaagatatatgatatttcatttatttaattcattacagacatagaaagatggaaacaacatgtgcacaca |
29230844 |
T |
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| Q |
400 |
tga |
402 |
Q |
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| T |
29230843 |
tga |
29230841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 262 - 384
Target Start/End: Complemental strand, 29241532 - 29241408
Alignment:
| Q |
262 |
aagtttgatgttttccaccatgacatcaaacacaaactaaaatataatgggggaattacataagtaaacaagat---atatgatatttcatttatttaat |
358 |
Q |
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||||||||||| ||||| ||||||| ||||||||||||||||||||||| |||||||||||||| ||||| || ||||||| ||||||||||||||| |
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| T |
29241532 |
aagtttgatgtcttccaatatgacattaaacacaaactaaaatataatggtggaattacataagt-aacaatatatgatatgatgtttcatttatttaat |
29241434 |
T |
|
| Q |
359 |
acattacagacatagaaagatggaaa |
384 |
Q |
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||| ||| ||||||||||||||||| |
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| T |
29241433 |
tcatgacatacatagaaagatggaaa |
29241408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 29226240 - 29226188
Alignment:
| Q |
349 |
tttatttaatacattacagacatagaaagatggaaacaacatgtgcacacatg |
401 |
Q |
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|||| ||||| ||||||| ||| ||||||||||||||||| |||||||||||| |
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| T |
29226240 |
tttacttaattcattacatacacagaaagatggaaacaacctgtgcacacatg |
29226188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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