View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_high_10 (Length: 496)
Name: NF19857_high_10
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 15 - 477
Target Start/End: Complemental strand, 39320641 - 39320180
Alignment:
| Q |
15 |
cagagacgaacttcagtcagttcccaaggcaacggttaatacgaagaagagagaggtaaacactcattctcctttctattttttaatgcatgttgttaaa |
114 |
Q |
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| T |
39320641 |
cagagacgaacttcagtcagttcccaaggcaacggttaatacgaagaagagagaggtaaacactcattctcctttctattttttaatgcatgttgttaaa |
39320542 |
T |
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| Q |
115 |
ctcgaagtgannnnnnnctttattcctcgttgcttgaagaaaaagtggctgcaacccttttctttgtataagaaatctacaaggaagcaagagtacgaag |
214 |
Q |
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| T |
39320541 |
ctcgaagtgatttttt-ctttattcctcgttgcttgaagaaaaagtggctgcaacccttttctttgtataagaaatctacaaggaagcaagagtacgaag |
39320443 |
T |
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| Q |
215 |
tgcttgcattattgcatgggaacaatgaaaatggaaatggtgattgcgtggagagtttatgtccaacttcggaggaagatgtctctgaacccgagtggga |
314 |
Q |
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| T |
39320442 |
tgcttgcattattgcatgggaacaatgaaaatggaaatggtgattgcgtggagagtttatgtccaacttcggaggaagatgtctctgaacccgagtggga |
39320343 |
T |
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| Q |
315 |
acttctctgtataccacggtgatcatgttgtaggtggagacgcgcaaatagtgtcggtgcaccaaagataatgcccttggatgtattaaaatctaaattg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39320342 |
acttctctgtataccacggtgatcatgttgtaggtggagacgcgcaaatagtgtcggtgcaccaaagataatgcccttggatgtattaaaatctaaattg |
39320243 |
T |
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| Q |
415 |
ttcattaaataatatatatccaacagttctaattagtgacacaccgttacaacttgtacatgc |
477 |
Q |
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| T |
39320242 |
ttcattaaataatatatatccaacagttctaattagtgacacaccgttacaacttgtacatgc |
39320180 |
T |
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