View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_high_15 (Length: 439)
Name: NF19857_high_15
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_high_15 |
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| [»] scaffold0085 (3 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 119 - 349
Target Start/End: Complemental strand, 46561 - 46331
Alignment:
| Q |
119 |
aagaaactattaaaaaagccccaaata--tttgagagagtgggggcccaaactaagaaatcaacacgcgcgggacacatgaaactgaactgttgaaaatt |
216 |
Q |
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|||||||||||||||||| |||||| | ||| |||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46561 |
aagaaactattaaaaaaggcccaaaaacatttaagagagtggg--cccaatctaagaaatcaacacgcgcgggacacatgatactgaactgttgaaaatt |
46464 |
T |
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| Q |
217 |
gaaatgtggcggtaactctcattcattcaaagcgtttgtcgcattgcgtaacagaacaacacaacaatggaagattcaggaacgattctctctcacattt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46463 |
gaaatgtggcggtaactctcattcattcaaagcgtttgtcgcattgcgtaacagaacaacacaacaatggaagattcaggaacgattctctctcacattt |
46364 |
T |
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| Q |
317 |
catctctcaaggaaatgctcgatcaggtaccta |
349 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
46363 |
catctctcaaggaaatgctcgatcaggtaccta |
46331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 47408 - 47362
Alignment:
| Q |
7 |
agccaacttcaaaccttcgaacacc-ctccaaaactctgctacatat |
52 |
Q |
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| T |
47408 |
agccaacttcaaaacttcgaacacctctccaaagctctgctacatat |
47362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 424
Target Start/End: Complemental strand, 46279 - 46251
Alignment:
| Q |
396 |
aatcatcataatagtttcattattattgt |
424 |
Q |
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| T |
46279 |
aatcatcataatagtttcattattattgt |
46251 |
T |
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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 33819669 - 33819738
Alignment:
| Q |
7 |
agccaacttcaaaccttcgaacaccctccaaaactctgctacatatgtactacaagctcccaaccccttc |
76 |
Q |
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| T |
33819669 |
agccaacttcaaaccttctaacaccctccaaagctctgcaacacatgcactacaagctcccaaccccttc |
33819738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 43337350 - 43337282
Alignment:
| Q |
7 |
agccaacttcaaaccttcgaacaccctccaaaactctgctacatatgtactacaagctcccaacccctt |
75 |
Q |
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| T |
43337350 |
agccaatttcaaaccttcaaacaccccccaaagctctgcaacatatgcactacaagctcccaacccctt |
43337282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 48875765 - 48875718
Alignment:
| Q |
22 |
ttcgaacaccctccaaaactctgctacatatgtactacaagctcccaa |
69 |
Q |
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| T |
48875765 |
ttcgaacacccgccaaagctctgcgacatatgcactacaagctcccaa |
48875718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 10018735 - 10018667
Alignment:
| Q |
7 |
agccaacttcaaaccttcgaacaccctccaaaactctgctacatatgtactacaagctcccaaccccttc |
76 |
Q |
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| T |
10018735 |
agccaacttcaaactttcgaacaccc-ccaaagctcggcaacatatgtactacaagctcccaaccccttc |
10018667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 42006216 - 42006285
Alignment:
| Q |
7 |
agccaacttcaaaccttcgaacaccctccaaaactctgctacatatgtactacaagctcccaaccccttc |
76 |
Q |
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| T |
42006216 |
agccaacttcaaaccttcgtacaccccctaaagctatgcaacatatgcactacaaactcccaaccccttc |
42006285 |
T |
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