View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_high_18 (Length: 378)
Name: NF19857_high_18
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 45 - 314
Target Start/End: Complemental strand, 38890533 - 38890257
Alignment:
| Q |
45 |
aggacaaaaacaatagagagagaaggagaa------agtaataagtaataacacaataaaagtataagataaaattattttgaaagttatcataaaatag |
138 |
Q |
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| T |
38890533 |
aggacaaaaacaatagagagagaaagagaaggagagagtaataagtaataacacaataaaagtataagagaaaattatttcgaaagttatcataaaatag |
38890434 |
T |
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| Q |
139 |
ttatataaatatcatttgtcgttaaacttttgacataatatagattaaatcaaaagtcactggtttctcttacaactatcatcactggtccatacaaccc |
238 |
Q |
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| T |
38890433 |
ttgtataaatatcatt-gtccttgaacttttgacataatatagattaaatcaaaagtcactggtttctcttacaactatcatcactggtctatacaaccc |
38890335 |
T |
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| Q |
239 |
actattggttaagctttaggtgtttcttgaaggagttaggctttcggtgttgtt--attccttcttaatagctattgg |
314 |
Q |
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| T |
38890334 |
actattggttaagctttaggtgtttcttgaaggagttaggctttcggtgttgttcaattccttcttaatagctattgg |
38890257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 47645284 - 47645328
Alignment:
| Q |
111 |
aattattttgaaagttatcataaaatagttatataaatatcattt |
155 |
Q |
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| T |
47645284 |
aattattttaaaaattatcataaaataattatataaatatcattt |
47645328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 1368175 - 1368226
Alignment:
| Q |
104 |
aagataaaattattttgaaagttatcataaaatagttatataaatatcattt |
155 |
Q |
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| T |
1368175 |
aagataatattattcgaaaagttgtcataaaatagttatataaatatcattt |
1368226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 52261392 - 52261342
Alignment:
| Q |
105 |
agataaaattattttgaaagttatcataaaatagttatataaatatcattt |
155 |
Q |
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||||||||||||| ||||||||||||||||||||| | ||||||||||| |
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| T |
52261392 |
agataaaattattacgaaagttatcataaaatagttgttcaaatatcattt |
52261342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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