View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_high_2 (Length: 840)
Name: NF19857_high_2
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 576; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 1 - 606
Target Start/End: Complemental strand, 3631291 - 3630684
Alignment:
| Q |
1 |
agaggtatctaaattcagatttcagaaacagagccatagacaaagagaaaccaaaaagcgtgtgtaggccctccaattccagctcaaaagaaaagctgat |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3631291 |
agaggtatctaaattcagatttcagaaacagaaccatagacaaagagaaaccaaaaagcgtgtgtaggccctccaattccagctcaaaagaaaagctgat |
3631192 |
T |
|
| Q |
101 |
tagaagagtatctctatatctgttacttcatctttttattaaccttaaaattttcattttcattcttgtctccttctttggtcatcggggctccacccct |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3631191 |
tagaagagtatctctctatctgttacttcatctttttattaaccttaaaattttcattttcattcttgtctccttctttggtcatcggggctccacccct |
3631092 |
T |
|
| Q |
201 |
tagccttttgaccaaaccaaaacccc-ttttttctctttttgatcccttaacattttctgctctacatttacttcatattttgcctctaaa-tctgtttg |
298 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
3631091 |
tagccttttgaccaaaccaaaacccccttttttctctttttgatcccttaacattttctgctctacatttacttcatactttgcctctaaaatctgtttg |
3630992 |
T |
|
| Q |
299 |
atcatggtagggctctccctcattaatggtaaaacctcattccacaacaaacccatgtgtgcatgtctcaagcacataagcttgcttcttctctgatcaa |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3630991 |
atcatggtagggctctccctcattaatggtaaaacctcattccacaacaaacccatgtgtgcatgtctcaagcacataagcttgcttcttctctgatcaa |
3630892 |
T |
|
| Q |
399 |
gttgcttccttttgtacttctcatacacctaagtccttaaatgttattgaaacatcactctcttaatgatttacctttgatcctacaaaaccatcattcc |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
3630891 |
gttgcttccttttgtacttctcatacacctaagtccttaaatgttattgaaacatcactctcttaatgatttacctttgattctacaaaaccatcattcc |
3630792 |
T |
|
| Q |
499 |
atttcagtatttcagtacctagctagcatttttccttgaacttaatacatctatattcactatatatactcattttccaaccttcgcaaaagtcccatct |
598 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3630791 |
atttcagtatttcagtacctagctagcatttttccttgaacttaatacatctatattcactatatatactcattttccaaccttcgcaaaagtcccatct |
3630692 |
T |
|
| Q |
599 |
gactgcta |
606 |
Q |
| |
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|||||||| |
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| T |
3630691 |
gactgcta |
3630684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 621 - 824
Target Start/End: Complemental strand, 3630653 - 3630450
Alignment:
| Q |
621 |
acgctatataggaaaactgaaacaattaattggctttttgtgtaattgggaagtctcattttgttattcaaatgttgagaaaaagcaaaagggtgtgttt |
720 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
3630653 |
acgctatataggaaaactgaaacaattaattggctttttgtgtaattgggaagtctcattttgttattcagatgttgagaaaaagcaaaaggttgtgttt |
3630554 |
T |
|
| Q |
721 |
tagtcctgatgatgttgatgagaaaccagccatttttctaaagcatggctgcatcaaagtattacgaaacagaaagaggctaatcggaacctggagtttc |
820 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3630553 |
tagtcctgatgatgttgatgagaaaccagccatttttctaaagcatggctgcatcaaagtattacgaaacagaaagaggctaatcggaacctggagtttc |
3630454 |
T |
|
| Q |
821 |
agat |
824 |
Q |
| |
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|||| |
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|
| T |
3630453 |
agat |
3630450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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