View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19857_high_24 (Length: 356)

Name: NF19857_high_24
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19857_high_24
NF19857_high_24
[»] chr7 (6 HSPs)
chr7 (1-344)||(14652716-14653059)
chr7 (1-344)||(14661151-14661494)
chr7 (110-344)||(14627299-14627533)
chr7 (44-344)||(14750048-14750348)
chr7 (44-344)||(14757970-14758270)
chr7 (154-344)||(14765240-14765430)
[»] chr5 (6 HSPs)
chr5 (1-344)||(17690693-17691036)
chr5 (1-344)||(17683767-17684110)
chr5 (110-344)||(17701960-17702194)
chr5 (7-344)||(17570265-17570605)
chr5 (154-344)||(17563169-17563359)
chr5 (42-106)||(17622017-17622081)
[»] chr1 (4 HSPs)
chr1 (42-344)||(15195574-15195876)
chr1 (42-344)||(15215992-15216294)
chr1 (55-341)||(15196238-15196524)
chr1 (55-341)||(15216656-15216942)
[»] scaffold1961 (1 HSPs)
scaffold1961 (141-344)||(22-225)
[»] chr8 (1 HSPs)
chr8 (7-226)||(24395510-24395732)


Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 14653059 - 14652716
Alignment:
Q  1 cattaataattttcttttcagtcttagggtccaagtaatgaactctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14653059 cattaataattttcttttcagtcttagggtccaagtaatgaactctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtc 14652960  T
Q  101 aaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14652959 aaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaa 14652860  T
Q  201 tccatcagcatctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttgaatacaaactccaaaagcgtattcgacagttgag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||    
T  14652859 tccatcagcatctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttaaatacaaactccaaaagcgtattcgacaatcgag 14652760  T
Q  301 tccttatctggtttgaataaataacattttctctccacaggttc 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14652759 tccttatctggtttgaataaataacattttctctccacaggttc 14652716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 14661494 - 14661151
Alignment:
Q  1 cattaataattttcttttcagtcttagggtccaagtaatgaactctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||| | |||||    
T  14661494 cattaataattttcttttcagtcttagggtccaagtaatgaattctatccgtttcctcagtcaggcacctctcaactttcttgagataatcctcgcagtc 14661395  T
Q  101 aaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaa 200  Q
    | | |||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14661394 acagcactcaatatatttctcagattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaattcttgctcataaacagaaggacctaaa 14661295  T
Q  201 tccatcagcatctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttgaatacaaactccaaaagcgtattcgacagttgag 300  Q
    || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14661294 tcaattagcatctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttgaatacaaactccaaaagcgtattcgacagtcgag 14661195  T
Q  301 tccttatctggtttgaataaataacattttctctccacaggttc 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14661194 tccttatctggtttgaataaataacattttctctccacaggttc 14661151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 110 - 344
Target Start/End: Complemental strand, 14627533 - 14627299
Alignment:
Q  110 aatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagc 209  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  14627533 aatatatttatgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatcaattagc 14627434  T
Q  210 atctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatct 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| | || |||||||||    
T  14627433 atctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctctttaaatacaaactccaaaagcgtattcgacaatcgattccttatct 14627334  T
Q  310 ggtttgaataaataacattttctctccacaggttc 344  Q
    |||||||||||||||||||||||||||||||||||    
T  14627333 ggtttgaataaataacattttctctccacaggttc 14627299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 44 - 344
Target Start/End: Original strand, 14750048 - 14750348
Alignment:
Q  44 tctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattca 143  Q
    |||||| |||||||||||||| |   |  |||||||||||| |||||| || || ||| || | | || | ||||||||||||||||| | ||  | |||    
T  14750048 tctatctgtttcctcattcagccgctttgcaactttcttgaaataatcaccgcaatcagaaaaatcaacaaatttctgggattcagccctatagaactca 14750147  T
Q  144 gctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaa 243  Q
    ||| ||||||| | |||||||||||||||| ||| |||||||||| | |||||||||||||| ||||||||||  | |||||||||| ||||||| ||||    
T  14750148 gctgaaacttgtaaaaaaggagtctcaaattcttcctcataaacaaagggacctaaatccattagcatctttgatagatttctaatcggttctctattaa 14750247  T
Q  244 catcttccccggcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatctggtttgaataaataacattttctctccacaggtt 343  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  14750248 catcttccgcagcatgctccttgaatacaaactccaaaagcgtattcgacagtcgagtccttatctggtttgaataaataacattctctctccacaggtt 14750347  T
Q  344 c 344  Q
    |    
T  14750348 c 14750348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 44 - 344
Target Start/End: Original strand, 14757970 - 14758270
Alignment:
Q  44 tctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattca 143  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| || || ||| | ||||  ||| ||||||| ||||||||| ||||  | |||    
T  14757970 tctatctgtttcctcattcaggcacctctcaactttcttgagataatcaccgcaatcacagcactcgataaatttctgagattcagccctgtagaactca 14758069  T
Q  144 gctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaa 243  Q
    ||| ||||||| ||||| | |||||| ||| ||||||| |||||||||| |||||||||||| ||||||||||||| |||| ||||||||||| | ||||    
T  14758070 gctgaaacttgtagaaacgaagtctcgaattcttgctcttaaacagaagaacctaaatccattagcatctttgtaatatttttaatcagttctatattaa 14758169  T
Q  244 catcttccccggcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatctggtttgaataaataacattttctctccacaggtt 343  Q
    |||||||||| ||||| |||||| |||| || ||||||||| ||||||||||| ||||||| ||||| ||||| ||||||||||| ||| ||||||||||    
T  14758170 catcttccccagcacgttccttgcatactaattccaaaagcatattcgacagtcgagtcctgatctgttttgagtaaataacattctctgtccacaggtt 14758269  T
Q  344 c 344  Q
    |    
T  14758270 c 14758270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 154 - 344
Target Start/End: Original strand, 14765240 - 14765430
Alignment:
Q  154 gcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaacatcttcccc 253  Q
    ||||||||||| |||||||| ||| ||||||||| |||||||||  ||| || ||||||||||| | | ||||||||||| |||| |||||| |||| ||    
T  14765240 gcagaaaaggattctcaaattcttcctcataaacggaaggacctgtatcaattagcatctttgttatacttctaatcagtcctctattaacaacttcgcc 14765339  T
Q  254 ggcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatctggtttgaataaataacattttctctccacaggttc 344  Q
    |||||||||  ||  ||| || ||||||||| ||||| ||||| ||||||||||||||||||||| || ||||||||||||||||||||||    
T  14765340 ggcacgctcactgtgtactaattccaaaagcatattcaacagtcgagtccttatctggtttgaatgaagaacattttctctccacaggttc 14765430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 17690693 - 17691036
Alignment:
Q  1 cattaataattttcttttcagtcttagggtccaagtaatgaactctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  17690693 cattaataattttcttttcagtcttagggtccaagtaatgaactctatccgtttcctcattcaagcacctctcaactttcttgagataatccccacagtc 17690792  T
Q  101 aaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17690793 aaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaa 17690892  T
Q  201 tccatcagcatctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttgaatacaaactccaaaagcgtattcgacagttgag 300  Q
    || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||     
T  17690893 tcaattagcatctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttgaatacaaactccaaaagcatattcgacaatcgat 17690992  T
Q  301 tccttatctggtttgaataaataacattttctctccacaggttc 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  17690993 tccttatctggtttgaataaataacattttctctccacaggttc 17691036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 17683767 - 17684110
Alignment:
Q  1 cattaataattttcttttcagtcttagggtccaagtaatgaactctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  17683767 cattaataattttcttttcagtcttagggtccaagtaatgaattctatccgtttcctcattcaggcacctctcaactttcttgagataatccccgcagtc 17683866  T
Q  101 aaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaa 200  Q
    | ||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17683867 acaacactcgatatatttctcggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaattcttgctcataaacagaaggacctaaa 17683966  T
Q  201 tccatcagcatctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttgaatacaaactccaaaagcgtattcgacagttgag 300  Q
    || || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  17683967 tcaattagcatctttgtaacatttctaatcagttctctgttaacatcttccccggcacactccttaaatacaaactccaaaagcgtattcgacagttgag 17684066  T
Q  301 tccttatctggtttgaataaataacattttctctccacaggttc 344  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  17684067 tccttatctggtttgaataaataacaatttctctccacaggttc 17684110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 110 - 344
Target Start/End: Original strand, 17701960 - 17702194
Alignment:
Q  110 aatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagc 209  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  17701960 aatatatttatgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatcaattagc 17702059  T
Q  210 atctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatct 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||| ||||||||||||    
T  17702060 atctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctctttaagtacaaactccaaaagcgtattcgacagtcgagtccttatct 17702159  T
Q  310 ggtttgaataaataacattttctctccacaggttc 344  Q
    |||||||||||||||||||||||||||||||||||    
T  17702160 ggtttgaataaataacattttctctccacaggttc 17702194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 7 - 344
Target Start/End: Complemental strand, 17570605 - 17570265
Alignment:
Q  7 taattttcttttcagtcttagggtccaagtaatga---actctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaa 103  Q
    |||| |||||||||||  ||||||||||||| ||    | |||||| ||||||||||||||||| ||||||||||||||||||||||| || || ||| |    
T  17570605 taatcttcttttcagtgctagggtccaagtagtggcacattctatctgtttcctcattcaggcacctctcaactttcttgagataatcaccgcaatcaca 17570506  T
Q  104 acacttaatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatcc 203  Q
     ||||  ||| ||||||| ||||||||| ||||  | |||||| ||||||| ||||| | |||||| ||| |||||||||||||||||| ||||||||||    
T  17570505 gcactcgataaatttctgagattcagccctgtagaactcagctgaaacttgtagaaacgaagtctcgaattcttgctcataaacagaagaacctaaatcc 17570406  T
Q  204 atcagcatctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtcc 303  Q
    || ||||||||||||| |||| ||||||||||| | |||||||||||||| ||||| |||||| |||| || ||||||||| ||||||||||| ||||||    
T  17570405 attagcatctttgtaatatttttaatcagttctatattaacatcttccccagcacgttccttgcatactaattccaaaagcatattcgacagtcgagtcc 17570306  T
Q  304 ttatctggtttgaataaataacattttctctccacaggttc 344  Q
    | ||||| ||||| ||||||||||| ||| |||||||||||    
T  17570305 tgatctgttttgagtaaataacattctctgtccacaggttc 17570265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 154 - 344
Target Start/End: Complemental strand, 17563359 - 17563169
Alignment:
Q  154 gcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaacatcttcccc 253  Q
    ||||||||||| |||||||| ||| | ||||||| |||||||||  ||| || ||||||||||| | | ||||||||||| |||| |||||| |||| ||    
T  17563359 gcagaaaaggattctcaaattcttccccataaacggaaggacctgtatcaattagcatctttgttatacttctaatcagtcctctattaacaacttcgcc 17563260  T
Q  254 ggcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatctggtttgaataaataacattttctctccacaggttc 344  Q
    |||||||||  ||  ||| || ||||||||| ||||| ||||| ||||||||||||||||||||| || ||||||||||||||||||||||    
T  17563259 ggcacgctcactgcgtactaattccaaaagcatattcaacagtcgagtccttatctggtttgaatgaagaacattttctctccacaggttc 17563169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 17622017 - 17622081
Alignment:
Q  42 actctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaaaca 106  Q
    |||||||||  |||||||||||| |  |||||| |||||||||||||||||||||| ||| ||||    
T  17622017 actctatccaattcctcattcagccgcctctcagctttcttgagataatccccacaatcacaaca 17622081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 42 - 344
Target Start/End: Original strand, 15195574 - 15195876
Alignment:
Q  42 actctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagatt 141  Q
    ||||||||  || ||||||||||||   ||||| | |||||||||||||||||||| ||| | |||| |||| ||||||| |||||||||  |||  | |    
T  15195574 actctatcaattacctcattcaggcgcatctcagccttcttgagataatccccacaatcacagcactcaataaatttctgtgattcagcccggtagaact 15195673  T
Q  142 cagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgtt 241  Q
    | |||  ||  |||||||||||| |||||||| ||||| ||||||| ||||| ||||||||||| ||||| ||||| | ||||||||||| || | ||||    
T  15195674 cggctggaagctgcagaaaaggattctcaaattcttgcacataaacggaaggtcctaaatccattagcatatttgttatatttctaatcacttttatgtt 15195773  T
Q  242 aacatcttccccggcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatctggtttgaataaataacattttctctccacagg 341  Q
    |||| |||| || |||   | |||| |||| || ||| ||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||    
T  15195774 aacaacttctccagcatagtacttgcatactaattcccaaagcgtattcgacaatcgagtccttatctggtttgaataaataacattttcgctccacagg 15195873  T
Q  342 ttc 344  Q
    |||    
T  15195874 ttc 15195876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 42 - 344
Target Start/End: Original strand, 15215992 - 15216294
Alignment:
Q  42 actctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagatt 141  Q
    ||||||||  || ||||||||||||   ||||| | |||||||||||||||||||| ||| | |||| |||| ||||||| |||||||||  |||  | |    
T  15215992 actctatcaattacctcattcaggcgcatctcagccttcttgagataatccccacaatcacagcactcaataaatttctgtgattcagcccggtagaact 15216091  T
Q  142 cagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgtt 241  Q
    | |||  ||  |||||||||||| |||||||| ||||| ||||||| ||||| ||||||||||| ||||| ||||| | ||||||||||| || | ||||    
T  15216092 cggctggaagctgcagaaaaggattctcaaattcttgcacataaacggaaggtcctaaatccattagcatatttgttatatttctaatcacttttatgtt 15216191  T
Q  242 aacatcttccccggcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatctggtttgaataaataacattttctctccacagg 341  Q
    |||| |||| || |||   | |||| |||| || ||| ||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||    
T  15216192 aacaacttctccagcatagtacttgcatactaattcccaaagcgtattcgacaatcgagtccttatctggtttgaataaataacattttcgctccacagg 15216291  T
Q  342 ttc 344  Q
    |||    
T  15216292 ttc 15216294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 55 - 341
Target Start/End: Original strand, 15196238 - 15196524
Alignment:
Q  55 cctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttg 154  Q
    ||||||||||||   ||||| | ||||| |||||||||||||| ||| | | || |||  ||||||| |||||||||  |||  | |||||| |||||||    
T  15196238 cctcattcaggcgcatctcagccttctttagataatccccacaatcatagcgctcaatcaatttctgtgattcagcccggtagaactcagctgaaacttg 15196337  T
Q  155 cagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaacatcttccccg 254  Q
    ||| |||||| |||||||| |||||  |||||| ||||||||||||||||| ||||| ||||| | || ||||||||||| ||| | |||| |||| ||     
T  15196338 cagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcagttttctatcaacaacttctcca 15196437  T
Q  255 gcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatctggtttgaataaataacattttctctccacagg 341  Q
    |||   |||||| |||| ||  |||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  15196438 gcatagtccttgcatactaataccaaaagcatattcgacaatcgagtccttatctggtttgaataaataacattttctctccacagg 15196524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 55 - 341
Target Start/End: Original strand, 15216656 - 15216942
Alignment:
Q  55 cctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttg 154  Q
    ||||||||||||   ||||| | ||||| |||||||||||||| ||| | | || |||  ||||||| |||||||||  |||  | |||||| |||||||    
T  15216656 cctcattcaggcgcatctcagccttctttagataatccccacaatcatagcgctcaatcaatttctgtgattcagcccggtagaactcagctgaaacttg 15216755  T
Q  155 cagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaacatcttccccg 254  Q
    ||| |||||| |||||||| |||||  |||||| ||||||||||||||||| ||||| ||||| | || ||||||||||| ||| | |||| |||| ||     
T  15216756 cagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcagttttctatcaacaacttctcca 15216855  T
Q  255 gcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatctggtttgaataaataacattttctctccacagg 341  Q
    |||   |||||| |||| ||  |||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  15216856 gcatagtccttgcatactaataccaaaagcatattcgacaatcgagtccttatctggtttgaataaataacattttctctccacagg 15216942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1961 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold1961
Description:

Target: scaffold1961; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 141 - 344
Target Start/End: Original strand, 22 - 225
Alignment:
Q  141 tcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgt 240  Q
    |||||| |||||||||| |||||| |||||||| |||||  |||||| ||||||||||||||||| ||||| || || |  ||||||||||||| | | |    
T  22 tcagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatattcgttatttttctaatcagttttttat 121  T
Q  241 taacatcttccccggcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatctggtttgaataaataacattttctctccacag 340  Q
    ||||  ||||| | |||   |||||| |||  ||  |||||||| ||||| | | | |||||||||||||||||||||||||||||||||||||||||||    
T  122 taacgacttcctcagcatagtccttgcatattaatcccaaaagcatattcaaaaatcgagtccttatctggtttgaataaataacattttctctccacag 221  T
Q  341 gttc 344  Q
    ||||    
T  222 gttc 225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 24395510 - 24395732
Alignment:
Q  7 taattttcttttcagtcttagggtccaagtaatg---aactctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaa 103  Q
    |||| |||||||||||||  || |||| ||||||   |||||||||| ||||||||||||| |  || ||| ||||||| |||||||| ||||| ||| |    
T  24395510 taatcttcttttcagtctcgggatccatgtaatggccaactctatccatttcctcattcagacgcctttcagctttcttaagataatcaccacaatcaca 24395609  T
Q  104 acacttaatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatcc 203  Q
    ||||| |||  || | ||||||||  |||  ||| | |||||| ||||||| |||||| ||| ||||||  ||||  |||||||||  ||||||||||||    
T  24395610 acactcaatgaatctttgggattctacctgataaaactcagctgaaacttgaagaaaatgagcctcaaaatcttgaccataaacagctggacctaaatcc 24395709  T
Q  204 atcagcatctttgtaacatttct 226  Q
    || ||||| ||||| | ||||||    
T  24395710 attagcatttttgttatatttct 24395732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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