View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_high_28 (Length: 343)
Name: NF19857_high_28
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_high_28 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 38890904 - 38890578
Alignment:
| Q |
19 |
aagttatgaataaaatctcctttatcatgtctgtaatatgaatgaaatgtctcaacgtctattttttcatgtcctactttgaaaaggtatggcttgatgt |
118 |
Q |
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| T |
38890904 |
aagttatgaataaaatctcctttatcatgtatgtaatatgaatgaaatgtctcaacgtctattttttcatgtcctactttgaaaaggtatggcttgatgt |
38890805 |
T |
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| Q |
119 |
attgaattagttgacaattagctgtgttttggctaatagtagctttcgttacgttgttcaatttaatggtttcgtatcccatgataaagtaatgcagtaa |
218 |
Q |
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| T |
38890804 |
attgaattagttgacaattagctgtgttttggctaatagtagctttcgttacgttgttcaatttaatggtttcgtatcccatgataaagtaatgcagtaa |
38890705 |
T |
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| Q |
219 |
ttaccttcactttatttgaatgacttgtatatgattgacatggaagtactcaaaacatgtggtttttggtcattgcaaatgcactat--atatcctataa |
316 |
Q |
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| T |
38890704 |
ttgccttcactttatttgaatgacttgtatatgattgacatggaagtactcaaaccatgtggtttttggtcattgcaaatgcactatatatatcatataa |
38890605 |
T |
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| Q |
317 |
tcgacatggttaaactcgagaaatttt |
343 |
Q |
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| T |
38890604 |
tcgacatggttaaactcgagaaatttt |
38890578 |
T |
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