View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_high_38 (Length: 279)
Name: NF19857_high_38
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 5 - 247
Target Start/End: Complemental strand, 30360215 - 30359974
Alignment:
| Q |
5 |
tggatgttggtgcaaactcgtctgaatgaagcattggtcattcgttaaaaactgtgtcatattattcaataaagatgtcatgagcatatagaataaacaa |
104 |
Q |
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| T |
30360215 |
tggatgttgatgcaaactcgtccgaatgaagtgttggtcattcgttaagaattgtgacatattcctcaataaagatgtcatgaacatatagaataaacaa |
30360116 |
T |
|
| Q |
105 |
agaaaaataaataaagaaatttactcttatattttctcctaaaataaagtagttgactcttatatttttaatatcatcatattaacaccgaccttatttt |
204 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30360115 |
agaaaaataaataaagaattttactcttatattttctcctaaaataaagtagttgact-ttatatttttaatatcatcatattaacaccgacattatttt |
30360017 |
T |
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| Q |
205 |
ctacaactttaacacaggcagttttttataatgtttatttgga |
247 |
Q |
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| T |
30360016 |
ctacaactttaacccagacaatttgttataatttttatttgga |
30359974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 40206252 - 40206356
Alignment:
| Q |
1 |
atgatggatgttggtgcaaactcgtctgaatgaagcattggtcattcgttaaaaactgtgtcatattattcaataaagatgtcatgagcatatagaataa |
100 |
Q |
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|||||||||||||||||||||| |||| || ||| ||| |||||| | || || || ||||| || ||||| ||| |||| ||||||||||||| || |
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| T |
40206252 |
atgatggatgttggtgcaaacttgtcttaacaaagtgttgctcattcatcaagaattgagtcatcttcctcaatgaagttgtcctgagcatatagaagaa |
40206351 |
T |
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| Q |
101 |
acaaa |
105 |
Q |
| |
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||||| |
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| T |
40206352 |
acaaa |
40206356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 12011259 - 12011155
Alignment:
| Q |
1 |
atgatggatgttggtgcaaactcgtctgaatgaagcattggtcattcgttaaaaactgtgtcatattattcaataaagatgtcatgagcatatagaataa |
100 |
Q |
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|||||||||||||||||||||||||| ||| ||| ||| |||||||| || ||| ||| ||| || ||||| ||| ||| ||| ||||||||||||| |
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| T |
12011259 |
atgatggatgttggtgcaaactcgtccgaacaaagtgttgctcattcgtcaagaacggtgccatcttcctcaatgaagttgttatgcgcatatagaataa |
12011160 |
T |
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| Q |
101 |
acaaa |
105 |
Q |
| |
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||||| |
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| T |
12011159 |
acaaa |
12011155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 19599205 - 19599307
Alignment:
| Q |
3 |
gatggatgttggtgcaaactcgtctgaatgaagcattggtcattcgttaaaaactgtgtcatattattcaataaagatgtcatgagcatatagaataaac |
102 |
Q |
| |
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||||| ||||||||||||||| || || |||| ||| | |||||| ||||||| ||||| || ||||| |||| |||||||||||||| ||||||| |
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| T |
19599205 |
gatgggtgttggtgcaaactcatccaaacgaagtgttgctaattcgtcgaaaactgagtcatcttcctcaatgaagaggtcatgagcatataaaataaac |
19599304 |
T |
|
| Q |
103 |
aaa |
105 |
Q |
| |
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||| |
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|
| T |
19599305 |
aaa |
19599307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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