View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_high_39 (Length: 275)
Name: NF19857_high_39
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 25099556 - 25099348
Alignment:
| Q |
16 |
aaaatgaggcttaagtcaatcattttcctgtccgaaagaaagaattatccacactcctccatttgtttttgttgctcttttaaacagggaaaatctcgag |
115 |
Q |
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| T |
25099556 |
aaaatgaggcttaagtcaatcattttcctgtccgaaaaaaagaattatccacactcctccatttgtttttgttgctcttttaaacagggaaaatctcgag |
25099457 |
T |
|
| Q |
116 |
gaagagttgataaggatgaatgtgcatgtgttggtaatgatcaacgtgcatccgttaaaagtgacatggaaactcatttaacataattaataaaagggtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| |
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| T |
25099456 |
gaagagttgataaggatgaatgtgcatgtgttggtaatgatcaacgtgcatccgttaaaagtgacatggagactca-ttaacataattaataaaagtgtt |
25099358 |
T |
|
| Q |
216 |
aaatatattt |
225 |
Q |
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|||||||||| |
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| T |
25099357 |
aaatatattt |
25099348 |
T |
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