View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19857_high_40 (Length: 267)
Name: NF19857_high_40
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_high_40 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 23 - 267
Target Start/End: Complemental strand, 772282 - 772038
Alignment:
| Q |
23 |
cccaaccaaaaccttcaaaacctattcccttctcttccacctttgatccttcaaacccaaccacttttcttgaaaaggtattcgactttatcgctaagga |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
772282 |
cccaaccaaaaccttcaaaacctattcccttctcttccacctttgatccttcaaacccaaccacttttcttgaaaaggtattcgacttcatcgctaagga |
772183 |
T |
|
| Q |
123 |
aagcaccgatttcttcgataaggattccgccgagaaggtggttttgtctgctgttcgcgctgctagggttaagaaagctaaggctgttgctgctgagaag |
222 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
772182 |
aagcaccaatttcttcgataaggattccgccgagaaggtggttttgtctgctgttcgcgctgctagggttaagaaagctaagtctgttgctgcggagaag |
772083 |
T |
|
| Q |
223 |
gctaagattgctgccaaggagaaagcaaaggctgctgctgagaaa |
267 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
772082 |
gctaagattgctgctaaggagaaagcaaaggctgctgctgagaaa |
772038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 25 - 260
Target Start/End: Original strand, 779269 - 779504
Alignment:
| Q |
25 |
caaccaaaaccttcaaaacctattcccttctcttccacctttgatccttcaaacccaaccacttttcttgaaaaggtattcgactttatcgctaaggaaa |
124 |
Q |
| |
|
|||||||||||||| ||| |||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
779269 |
caaccaaaaccttcgaaaactattcccttttcttccacctttgatccttcaaaaccaactgcttttcttgaaaaggtattcgacttcatcgctaaggaaa |
779368 |
T |
|
| Q |
125 |
gcaccgatttcttcgataaggattccgccgagaaggtggttttgtctgctgttcgcgctgctagggttaagaaagctaaggctgttgctgctgagaaggc |
224 |
Q |
| |
|
| || |||||||||||||||||||| || |||||| ||||||||||||||||||| ||||| | ||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
779369 |
gtactgatttcttcgataaggattcggctgagaagatggttttgtctgctgttcgtgctgcgaaggtgaagaaagccaaggctgttgctgctgagaaggc |
779468 |
T |
|
| Q |
225 |
taagattgctgccaaggagaaagcaaaggctgctgc |
260 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||| |
|
|
| T |
779469 |
taagattgcttcccaggagaaagcaaaggctgctgc |
779504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 783490 - 783701
Alignment:
| Q |
25 |
caaccaaaaccttcaaaacctattcccttctcttccacctttgatccttcaaacccaaccacttttcttgaaaaggtattcgactttatcgctaaggaaa |
124 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
783490 |
caaccaaaaccctcaaaacctattcccttctcttccaccttcgatccatcaaatccaactgcttttctcgaaaatgtattcgacttcatcgctaaggaaa |
783589 |
T |
|
| Q |
125 |
gcaccgatttcttcgataaggattccgccgagaaggtggttttgtctgctgttcgcgctgctagggttaagaaagctaaggctgttgctgctgagaaggc |
224 |
Q |
| |
|
| ||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||||| ||||| || |
|
|
| T |
783590 |
gtaccgatttcttcgataatgattcagctgagaaggtggttttgtccgctgttcgcgctgtgaaggtaaagaaagctaaggctgttgctgccgagaaagc |
783689 |
T |
|
| Q |
225 |
taagattgctgc |
236 |
Q |
| |
|
|||||||||||| |
|
|
| T |
783690 |
taagattgctgc |
783701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 204
Target Start/End: Complemental strand, 24269489 - 24269310
Alignment:
| Q |
25 |
caaccaaaaccttcaaaacctattcccttctcttccacctttgatccttcaaacccaaccacttttcttgaaaaggtattcgactttatcgctaaggaaa |
124 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
24269489 |
caaccaaaatcctcaaaacctattcccttctcttccacctttgatccatcaaatccaaccgcttttctcaaaaatgtattcgacttcatcgctaaggaaa |
24269390 |
T |
|
| Q |
125 |
gcaccgatttcttcgataaggattccgccgagaaggtggttttgtctgctgttcgcgctgctagggttaagaaagctaag |
204 |
Q |
| |
|
| ||| |||||||||||| ||||| || ||||||||||||||||| ||| || || ||| | ||| |||||||||||| |
|
|
| T |
24269389 |
gtaccagtttcttcgataatgattcggctgagaaggtggttttgtccgctatttgcactgtgaaggtaaagaaagctaag |
24269310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University