View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19857_high_43 (Length: 261)
Name: NF19857_high_43
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_high_43 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 30325328 - 30325443
Alignment:
| Q |
150 |
tatatatacaccatcctcaacaactcaaccacccacattccattcccaaaatccaaaa----cactgaatcaatggcttcaacaacacaagcactaataa |
245 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30325328 |
tatatatacaccatcctcaacaattcaaccacccacattccattcccaaaatccaaaacactcactgaatcaatgggttcaacaacacaagcactaataa |
30325427 |
T |
|
| Q |
246 |
tgctggctttctcata |
261 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30325428 |
tgctggctttctcata |
30325443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 30325246 - 30325301
Alignment:
| Q |
10 |
attatactcctcaatcatttttaccattatatccatcaatttccgcatatcctccc |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30325246 |
attatactcctcaatcatttttaccattatatccatcaatttccacatatcctccc |
30325301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 30337007 - 30337080
Alignment:
| Q |
192 |
ttcccaaaatccaaaacact----gaatcaatggcttcaacaacacaagcactaataatgctggctttctcata |
261 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
30337007 |
ttcccaaaatccaaaacactcactgaatcaatgggttcaacaacacaagcactgataatacttgctttctcata |
30337080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 30336850 - 30336885
Alignment:
| Q |
18 |
cctcaatcatttttaccattatatccatcaatttcc |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
30336850 |
cctcaatcatttttaccattatatccatcaatttcc |
30336885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University