View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_high_5 (Length: 543)
Name: NF19857_high_5
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Complemental strand, 37555748 - 37555206
Alignment:
| Q |
1 |
atactgctgaggaccctttgattcaactattccccaccagacatcaaccataactccatcaacacctgctgctcgtagctccgtcagctgtttctcgagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37555748 |
atactgctgaggaccctttgattcaactattccccaccagacatcaaccataactccatcaacacctgctgctcgtagctccgtcagctgtttctcgagt |
37555649 |
T |
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| Q |
101 |
tttgctctatcttccaagacattgtcgtttgtaatcactcctagctggaaggaggaaccaacacatttttgaaatggaacatatatgcatatagatattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37555648 |
tttgctctatcttccaagacattgtcgtttgtaatcactcctagctggaaggaggaaccaacacatttttgaaatggaacatatatgtatatagatattt |
37555549 |
T |
|
| Q |
201 |
gagaatagtgtagttacttactggaagcatcacatatataggtacataatttgcaagcattggatcttcgtatgttggaggaacaattggtgcctgcatt |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37555548 |
gagaatagtgtagttacttactgggagcatcacatatataggtacataatttgcaagcattggatcttcgtatgttggaggaacaattggtgcctgcatt |
37555449 |
T |
|
| Q |
301 |
tgatgaccaaaaatgttatgttagaactgtatatttggagatcctactgcaagcttttcttggctccatgcaattttttctaattaaaatctaaaaatac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37555448 |
tgatgaccaaaaatgttatgttagaactgtatatttggagatcctactgcaagcttttcttggctccatgcaattttttctaattaaaatttaaaaatac |
37555349 |
T |
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| Q |
401 |
cataaatatgtttctatgtcggcgttatcgtgataaccaaaacacgatacatgcatcctcttgctctacagatttttcttatttctagtacacggcaaac |
500 |
Q |
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|||| |||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37555348 |
catatatatttttctatgtcggcgttatcttgataaccaaaacaccatacatgcatcctcttgctctacagatttttcttatttctagtacatggcaaac |
37555249 |
T |
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| Q |
501 |
tactgcacattgttgttttagtaccgccaagaaaatatgaatt |
543 |
Q |
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| T |
37555248 |
tactgcacattgttgttttagtaccgccaagaaaatatgaatt |
37555206 |
T |
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