View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19857_high_7 (Length: 539)
Name: NF19857_high_7
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 179 - 521
Target Start/End: Original strand, 12386875 - 12387217
Alignment:
| Q |
179 |
cactactaaatgcctcttaagtatatcagtatgatgtctttatcccttcactcttagaaatggagtaatataataaaacctgataatcataaacttttca |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12386875 |
cactactaaatgcctcttaagtatatcagtatgatgtctttatcccttcactcttagaaatggagtaatataataaaacctgataatcataaacttttca |
12386974 |
T |
|
| Q |
279 |
ttacttcttagccttttgtgatagtaaagagaatatccagtctatcggacgatcgaagaggtagagtactggaagagacctacccatgaagagctgacat |
378 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12386975 |
ttacttcttagccttttgtgatattaaagagaatatgcagtctatcggacgatcgaagaggtagagtactggaagagacctacccatgaagagctgacat |
12387074 |
T |
|
| Q |
379 |
gggaggttttcaaggggaaattccacaagaaatactttccacttattgctaggtatgggaaataggcctagatgttgagattatcctaagaagaccaaat |
478 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12387075 |
gggaggatttcaaggggaaattccacaagaaatactttccacttattgctaggtatgggaaataggcctagatgttgagattatcctaagaagaccaaat |
12387174 |
T |
|
| Q |
479 |
tgttgcagaatttaataccaagtttgaaaccatggccaagcat |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12387175 |
tgttgcagaatttaataccaagtttgaaaccatggccaagcat |
12387217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 12386697 - 12386811
Alignment:
| Q |
1 |
atggaaaaaagtagagtcataacataaacaaatttcatagtttctgccatatttttcctctttgcataaaaaatataggtaagatatatttatagtgtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12386697 |
atggaaaaaagtagagtcataacataaacaaatttcatagtttctgccatatttttcctctttgcataaaaaatataggtaagatatatttatagtgtat |
12386796 |
T |
|
| Q |
101 |
aaatttcatgctctc |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
12386797 |
aaatttcatgctctc |
12386811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 1872380 - 1872447
Alignment:
| Q |
1 |
atggaaaaaagtagagtcataacataaacaaatttcatagtttctgccatatttttc-ctctttgcat |
67 |
Q |
| |
|
||||||| || |||| ||| |||||||||||| |||| |||||| |||||||||||| |||||||||| |
|
|
| T |
1872380 |
atggaaataaatagaatcagaacataaacaaacttcagagtttcagccatatttttcactctttgcat |
1872447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 15465500 - 15465556
Alignment:
| Q |
1 |
atggaaaaaagtagagtcataacataaacaaatttcatagtttctgccatatttttc |
57 |
Q |
| |
|
||||||| ||| ||| ||| |||||||||||| |||| |||||| |||||||||||| |
|
|
| T |
15465500 |
atggaaataagcagaatcagaacataaacaaacttcagagtttcagccatatttttc |
15465556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University