View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_low_10 (Length: 530)
Name: NF19857_low_10
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 77 - 522
Target Start/End: Complemental strand, 50243636 - 50243190
Alignment:
| Q |
77 |
gcatcaatcctcaattttccattcagcttaagaaagaaaaataaaatccaacctgcaacgaaaatagctatgacaataagaagctcctcaaaagctccac |
176 |
Q |
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| T |
50243636 |
gcatcaatcctcaattttccattcagcttaagaaagaaaaataaaatccaacctgcaacgaaaatagctatgacaataagaagctcctcaaaagctccac |
50243537 |
T |
|
| Q |
177 |
caactaaaactgataatcgtgcaatccctatagcaagcactcctgctgaaattgttcccaaagcacgattgaaccctttgttaagggttgcacctaatct |
276 |
Q |
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| T |
50243536 |
caactaaaactgataatcgtgcaatccctatagcaagcactcctgctgaaattgttcccaaagcacgattgaaccctttgttaagggttgcacctaatct |
50243437 |
T |
|
| Q |
277 |
cagaaagnnnnnnnngttaactttttcattaaacaaagacatatttc---aaaacnnnnnnnnnngaaattcacatagtatttcgttgtctgtcacaaca |
373 |
Q |
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| T |
50243436 |
cagaaagaaaaaaaagttaactttttcattaaacaaagac--atttcaaaaaaaaaaaaaagaaagaaattcacatagtatttcgttgtctgtcacaaca |
50243339 |
T |
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| Q |
374 |
ataataataagtaacaactatatcgccccgacacttgagattgaaagcatgttcaatgtctaacatgtgtaggtgtatgtgacattggcacaacaccgac |
473 |
Q |
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| T |
50243338 |
ataataataagtaacaactatatcggcccgacacttgagattgaaaacatgttcaatgtctaacatgtgtaggtgtatgtgacattggcacaacaccgac |
50243239 |
T |
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| Q |
474 |
atagtcattttatattggtagttgaatagaatagattcctacctatgct |
522 |
Q |
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| T |
50243238 |
atagtcattttatattggtagttgaatagaatagattcctacctatgct |
50243190 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 3963719 - 3963755
Alignment:
| Q |
403 |
gacacttgagattgaaagcatgttcaatgtctaacat |
439 |
Q |
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| T |
3963719 |
gacactttagattgaaggcatgttcaatgtctaacat |
3963755 |
T |
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