View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_low_13 (Length: 495)
Name: NF19857_low_13
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 37419531 - 37419938
Alignment:
| Q |
19 |
agtcacggcttccttgagactagggaagttgtctgacggagtggccgctgacttagctgccgcttcgcgttcctcggcttcggctgcctccgaatcggcc |
118 |
Q |
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| T |
37419531 |
agtcacggcttccttgagactagggaagttgtctgacggagcggccgctgacttagctgccgcttcgcgttcctcggcttcggctgcctccgaatcggcc |
37419630 |
T |
|
| Q |
119 |
gcccaagctccgatattgccccagggtttcgacattttcgagatctcnnnnnnnttgaaaagattagagatcggtttttcttgtgtttgaaaaatgttgt |
218 |
Q |
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| T |
37419631 |
gcccaagctccgatattgccccagggtttcgacattttcgagatctcaaaaaaattgaaaagattagagatcggtttttcttgtgtttgaaaaatgttgt |
37419730 |
T |
|
| Q |
219 |
tgttgagccggggctccgttaatggagccggagctccgagaacatgcaaaagataaagaaaggaaggggagaggctagaatgcgaaaggaaatgcgaatg |
318 |
Q |
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| T |
37419731 |
tgttgagccggggctccgttaatggagccggagctccgagaacatgcaaaagataaagaaaggaaggggagaggctagaatgcgaaaggaaatgcgaatg |
37419830 |
T |
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| Q |
319 |
gagaggaaatgaaaaggaatgagattaaagagaggatcgattggtcacgcgcggcacggtttctttccatgcatgtgggaaagaaactacccaaaactaa |
418 |
Q |
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| T |
37419831 |
gagaggaaatgaaaaggaatgagattaaagagaggatcgattggtcacgcgcggcacggtttctttccatgcatgtgggaaagaaactacccaaaactaa |
37419930 |
T |
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| Q |
419 |
ttagttaa |
426 |
Q |
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||| |||| |
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| T |
37419931 |
ttaattaa |
37419938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 459
Target Start/End: Original strand, 37420123 - 37420164
Alignment:
| Q |
418 |
attagttaaaggcttaattaaaacccttaattaattaatcaa |
459 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
37420123 |
attaattaaatgcttaattaaaacccttaattaattaatcaa |
37420164 |
T |
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