View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_low_15 (Length: 465)
Name: NF19857_low_15
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_low_15 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 28608887 - 28608432
Alignment:
| Q |
1 |
caacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttag |
100 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608887 |
caacaaataatcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttag |
28608788 |
T |
|
| Q |
101 |
ttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaac |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28608787 |
ttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcgtgaatggttgcatattcggacacaacatttaac |
28608688 |
T |
|
| Q |
201 |
gtttctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
28608687 |
gtttctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatcttgtaagattttgtgttccag |
28608588 |
T |
|
| Q |
301 |
attggccactaggcttctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608587 |
attggccactaggcttctccatatgagaagcaacaagtgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtct |
28608488 |
T |
|
| Q |
401 |
agtggcattgaaagattcaatgaggctaataacccctacagcctgacgagtattat |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28608487 |
agtggcattgaaagattcaatgaggctaataacccctacagcttgacgagtattat |
28608432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 454
Target Start/End: Original strand, 438019 - 438470
Alignment:
| Q |
3 |
acaaataatcccaccgagcaaggtgcactttgcatcacattcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagtt |
102 |
Q |
| |
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||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||| | ||| || ||||||||| | ||||||||| | |||||||| |
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| T |
438019 |
acaaatattcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgtatgcagtattagttgtttcgagtgcaccttctgaacttagtt |
438118 |
T |
|
| Q |
103 |
gtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacgt |
202 |
Q |
| |
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||||||||||||||||||||||||| |||||| |||||| ||| | | |||||||| ||||| |||||||||||||| | ||||||||||||| || |
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| T |
438119 |
gtttgtggaatggaaggagaatcaaacttgtacatttttcattagccgagttgtatatatcttcgtgaatggttgcatagtttgacacaacatttagtgt |
438218 |
T |
|
| Q |
203 |
ttctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagat |
302 |
Q |
| |
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|| ||||| |||||||||||||||||| ||| ||||||||| |||| ||| ||||||||||||| ||||||| |||||||||||||||| |||| |
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| T |
438219 |
ttggactctaatagcatcatatgcctctttgaatgcttcaaaggtattggtaatgctttctaactctagctgggattgtgtaagattttgtgttccagat |
438318 |
T |
|
| Q |
303 |
tggccactaggcttctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctag |
402 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| |||||| ||| |||||||||| ||||| |
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| T |
438319 |
tggccactagatttttccatatgagaagcaacaagggcaccaacacgtccaacgatttcaacaaggtaaaggccaaaaacatgtataggggaaattctag |
438418 |
T |
|
| Q |
403 |
tggcattgaaagattcaatgaggctaataacccctacagcctgacgagtatt |
454 |
Q |
| |
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||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |
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| T |
438419 |
tggcattgaaatattcaatgaggctaataactcctacggcctgacgagtatt |
438470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 13652758 - 13652305
Alignment:
| Q |
1 |
caacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttag |
100 |
Q |
| |
|
||||||| | |||||| |||||||||||| ||||||||||||||| ||| ||||||||| | |||||| ||||||||| | ||||||| | ||||| |
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| T |
13652758 |
caacaaagattcccacagagcaaggtgcagtttgcatcacattcaggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaa |
13652659 |
T |
|
| Q |
101 |
ttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaac |
200 |
Q |
| |
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||||| ||||||||||| | ||||| |||||| |||||||| ||| || |||| |||||||| || |||||||||||||| |||||||||||||| |
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| T |
13652658 |
gtgtttatggaatggaagtataatcatgcttgtgtgtttttcattagctgaattatatatgtcctcgtgaatggttgcataggatgacacaacatttaag |
13652559 |
T |
|
| Q |
201 |
gtttctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctag |
300 |
Q |
| |
|
||| ||||| | |||||| || ||||||| | |||||||||| |||||| ||| |||||| ||||| |||||| || ||||||||||||| || || |
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| T |
13652558 |
gttcggactctaacagcatcgtacgcctctccaaatgcttcaaatgtattattaatgctttcttgctctacctgggaactggtaagattttgtgctccag |
13652459 |
T |
|
| Q |
301 |
attggccactaggcttctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtct |
400 |
Q |
| |
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||| |||||||||| |||||||||| |||||||| |||||| |||||| |||||||| ||||||||||| ||||| ||| |||||||||| ||| |
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| T |
13652458 |
gttgcacactaggcttatccatatgagcagcaacaagtgcaccggtacgtcctttgagttcaataaggtaaagtgaaaaaacatgtataggggaaattct |
13652359 |
T |
|
| Q |
401 |
agtggcattgaaagattcaatgaggctaataacccctacagcctgacgagtatt |
454 |
Q |
| |
|
||||||||||||||| | ||||||| | |||||||||| ||| || |||||||| |
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|
| T |
13652358 |
agtggcattgaaagactgaatgaggttgataacccctatagcgtggcgagtatt |
13652305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 13660258 - 13659803
Alignment:
| Q |
1 |
caacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttag |
100 |
Q |
| |
|
||||||| | |||||| |||||||||| | |||||||||||||| ||| ||||||||| | |||||| ||||||||| | ||||||| | ||||| |
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|
| T |
13660258 |
caacaaagattcccacagagcaaggtgaagtttgcatcacattctggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaa |
13660159 |
T |
|
| Q |
101 |
ttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaac |
200 |
Q |
| |
|
||||| ||||||||||| | ||||| |||||| ||||||| ||| | | || |||||||| || |||||||||| ||| |||||||||||||| |
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| T |
13660158 |
gtgtttatggaatggaagtataatcatgcttgtgcgtttttcattagcagagttatatatgtcctcatgaatggttgaataggatgacacaacatttaag |
13660059 |
T |
|
| Q |
201 |
gtttctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctag |
300 |
Q |
| |
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||||| ||||||| ||||||||||||||||| |||||||||||| |||||| ||| |||||| ||||| |||||||| ||||||||||| | || || |
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| T |
13660058 |
gtttcgactctgacagcatcatatgcctctccaagtgcttcaaatgtattattaatgctttcttgctctacttgggatcttgtaagattttgcgctccag |
13659959 |
T |
|
| Q |
301 |
attggccactaggcttctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtct |
400 |
Q |
| |
|
|||| ||||||||| |||||||||| ||||||| ||||||| |||||| |||||||| |||||||||||| |||| ||| |||||||||| ||| |
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| T |
13659958 |
gttggttactaggcttatccatatgagcggcaacaagtgcaccagtacgtcctttgagttcaataaggtaaagtgcgaaaacatgtataggggaaattct |
13659859 |
T |
|
| Q |
401 |
agtggcattgaaagattcaatgaggctaataacccctacagcctgacgagtattat |
456 |
Q |
| |
|
||| |||||||||||||||| |||||| ||||||||| |||||| |||| ||||| |
|
|
| T |
13659858 |
agtagcattgaaagattcaacgaggctgataacccctgtagcctggcgagcattat |
13659803 |
T |
|
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