View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_low_16 (Length: 445)
Name: NF19857_low_16
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 3e-83; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 101 - 290
Target Start/End: Complemental strand, 27099420 - 27099231
Alignment:
| Q |
101 |
ctctaaggtgtggtataggatttttaagtggttaggttggatttcagttttgcctaaggacttagtttgtctttttgaggggtttctagagctagttggg |
200 |
Q |
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| T |
27099420 |
ctctaaggtgtggtataggatttttaagtggttaggttggatttcaattttgcctaatgacttagtttgtctttttgaggggtttctagagctagttggg |
27099321 |
T |
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| Q |
201 |
agagataaaactatgcatgnnnnnnngttgatttgacatacaatggtgtggaccatatggatagcccgtaacgatcttatattttatggt |
290 |
Q |
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| T |
27099320 |
agagataaaactatgcatgcttttttgttgatttgacatacaatggtgtggaccatttggatagcccgtaacgatcttatattttatggt |
27099231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 101 - 290
Target Start/End: Original strand, 27178883 - 27179072
Alignment:
| Q |
101 |
ctctaaggtgtggtataggatttttaagtggttaggttggatttcagttttgcctaaggacttagtttgtctttttgaggggtttctagagctagttggg |
200 |
Q |
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| T |
27178883 |
ctctaaggtgtggtataggatttttaagtggttaggttggatttcaattttgcctaatgacttagtttgtctttttgaggggtttctagagctagttggg |
27178982 |
T |
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| Q |
201 |
agagataaaactatgcatgnnnnnnngttgatttgacatacaatggtgtggaccatatggatagcccgtaacgatcttatattttatggt |
290 |
Q |
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| T |
27178983 |
agagataaaactatgcatgcttttttgttgatttgacatacaatggtgtggaccatttggatagcccgtaacgatcttatattttatggt |
27179072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 27099570 - 27099485
Alignment:
| Q |
18 |
ggttctcttcgcagctcctcctagataggataccaactaaagctaatatgcttaagcataggagtattagtgatccgttggtgctc |
103 |
Q |
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| T |
27099570 |
ggttcccttcgcagctcctcctagataggataccaactaaagctaatatgcttaagtataggagtattagtgatccgttggtgctc |
27099485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 27178733 - 27178818
Alignment:
| Q |
18 |
ggttctcttcgcagctcctcctagataggataccaactaaagctaatatgcttaagcataggagtattagtgatccgttggtgctc |
103 |
Q |
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| T |
27178733 |
ggttcccttcgcagctcctcctagataggataccaactaaagctaatatgcttaagtataggagtattagtgatccgttggtgctc |
27178818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 26411173 - 26411205
Alignment:
| Q |
107 |
ggtgtggtataggatttttaagtggttaggttg |
139 |
Q |
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| T |
26411173 |
ggtgtggtataggatttttatgtggttaggttg |
26411205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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