View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_low_18 (Length: 418)
Name: NF19857_low_18
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 53175521 - 53175165
Alignment:
| Q |
18 |
caccttgaaaccaaacacagtcttggctttgtctctatgtttgtagactcaaacacaaacacagacacggacacagagttatctatttcattgtcctctg |
117 |
Q |
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| T |
53175521 |
caccttgaaaccaaacacagtcttggctttgtctctatgtttgtagactcaaacacaaacacagacac------agagttatctatttcattgtcctctg |
53175428 |
T |
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| Q |
118 |
ttttgcatgaaacagagtactctgtttgatattcattgtgatgaggtatataagaacaggcagcttcaagaggctcttctcatttaccaaacgtggttta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53175427 |
ttttgcatgaaacagagtactctgtttgatattcattgtgatgaggtatataagaacaggcagcttcaagaggctcttctcatttaccaaacgtggttta |
53175328 |
T |
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| Q |
218 |
ggggaaccagttctgagtcccaaaggtgaagaaaatgaaaagagcttgaagattcttccatatgaagaagaaacttgtcaaagaccaacttggaaatgtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
53175327 |
ggggaaccagttctgagtcccaaaggtgaagaaaatgaaaagagcttgaagattcttccatatgaagaagaaacttgtcaaaaaccaacatggaaatgtt |
53175228 |
T |
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| Q |
318 |
tctcttatgaagagttgtttgatgctaccaatggcttcaactcaggtgattaagacttgtttg |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53175227 |
tctcttatgaagagttgtttgatgctaccaatggcttcaactcaggtgattaagacttgtttg |
53175165 |
T |
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