View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19857_low_19 (Length: 416)

Name: NF19857_low_19
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19857_low_19
NF19857_low_19
[»] chr7 (14 HSPs)
chr7 (6-397)||(43105278-43105669)
chr7 (226-338)||(15653546-15653658)
chr7 (181-350)||(12378557-12378723)
chr7 (196-340)||(45943008-45943152)
chr7 (226-301)||(46623892-46623967)
chr7 (60-137)||(12378767-12378844)
chr7 (196-340)||(13440210-13440354)
chr7 (54-137)||(15653747-15653830)
chr7 (64-137)||(46623730-46623803)
chr7 (60-142)||(3104925-3105007)
chr7 (62-139)||(45942874-45942951)
chr7 (62-142)||(13440076-13440156)
chr7 (239-339)||(18671370-18671470)
chr7 (281-333)||(45992818-45992870)
[»] chr5 (6 HSPs)
chr5 (226-340)||(10486759-10486873)
chr5 (225-338)||(587702-587815)
chr5 (226-340)||(34481134-34481248)
chr5 (60-142)||(32918339-32918421)
chr5 (274-311)||(23923084-23923121)
chr5 (281-333)||(11574540-11574592)
[»] chr4 (16 HSPs)
chr4 (226-342)||(8654910-8655026)
chr4 (226-338)||(7663080-7663192)
chr4 (228-340)||(47541114-47541226)
chr4 (226-339)||(3129822-3129932)
chr4 (196-340)||(2631555-2631699)
chr4 (196-340)||(55298777-55298921)
chr4 (196-340)||(23873315-23873459)
chr4 (60-136)||(8655116-8655192)
chr4 (196-340)||(20675179-20675323)
chr4 (54-141)||(7663277-7663364)
chr4 (226-340)||(8486820-8486934)
chr4 (226-328)||(53810028-53810130)
chr4 (81-142)||(8487018-8487079)
chr4 (240-333)||(19647910-19648003)
chr4 (62-142)||(23873513-23873593)
chr4 (62-142)||(55298643-55298723)
[»] scaffold0418 (2 HSPs)
scaffold0418 (226-338)||(7862-7974)
scaffold0418 (54-141)||(7690-7777)
[»] chr8 (5 HSPs)
chr8 (226-338)||(7452539-7452651)
chr8 (226-317)||(19384572-19384663)
chr8 (196-340)||(16420849-16420993)
chr8 (55-137)||(7452368-7452450)
chr8 (62-142)||(2872213-2872293)
[»] chr2 (11 HSPs)
chr2 (226-338)||(45421706-45421818)
chr2 (175-350)||(31085466-31085641)
chr2 (196-340)||(33548029-33548173)
chr2 (196-340)||(43627656-43627800)
chr2 (54-141)||(45421534-45421621)
chr2 (196-317)||(22052784-22052905)
chr2 (62-142)||(22052650-22052730)
chr2 (60-142)||(26179964-26180046)
chr2 (226-308)||(31774871-31774953)
chr2 (240-333)||(15017877-15017970)
chr2 (62-142)||(43627522-43627602)
[»] chr3 (11 HSPs)
chr3 (226-340)||(49731771-49731885)
chr3 (61-350)||(9379119-9379408)
chr3 (226-338)||(30167185-30167298)
chr3 (226-340)||(2813339-2813453)
chr3 (226-340)||(29309595-29309709)
chr3 (54-141)||(30167383-30167470)
chr3 (226-340)||(23601960-23602074)
chr3 (62-142)||(2813537-2813617)
chr3 (226-340)||(6176317-6176431)
chr3 (226-332)||(25872955-25873061)
chr3 (62-142)||(23601796-23601876)
[»] chr1 (11 HSPs)
chr1 (226-340)||(48265557-48265671)
chr1 (229-338)||(36305974-36306083)
chr1 (226-340)||(30970447-30970561)
chr1 (226-340)||(32353136-32353250)
chr1 (196-340)||(48073270-48073414)
chr1 (226-353)||(21528348-21528479)
chr1 (55-137)||(36929183-36929265)
chr1 (65-137)||(36305810-36305882)
chr1 (258-340)||(37530785-37530867)
chr1 (240-333)||(25504839-25504932)
chr1 (62-142)||(32353334-32353414)
[»] chr6 (12 HSPs)
chr6 (229-320)||(33630287-33630378)
chr6 (196-340)||(15673982-15674126)
chr6 (196-340)||(23347306-23347450)
chr6 (196-350)||(25318011-25318165)
chr6 (196-350)||(26205505-26205659)
chr6 (226-309)||(1683227-1683310)
chr6 (81-142)||(25317896-25317957)
chr6 (81-142)||(26205390-26205451)
chr6 (62-142)||(15673848-15673928)
chr6 (281-333)||(19255882-19255934)
chr6 (62-142)||(23347503-23347583)
chr6 (281-333)||(33640160-33640212)
[»] scaffold0029 (1 HSPs)
scaffold0029 (264-383)||(134650-134769)
[»] scaffold0002 (2 HSPs)
scaffold0002 (264-383)||(312477-312596)
scaffold0002 (264-383)||(327931-328050)
[»] scaffold0112 (1 HSPs)
scaffold0112 (226-339)||(15490-15603)


Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 6 - 397
Target Start/End: Original strand, 43105278 - 43105669
Alignment:
Q  6 agcagcacagaaggacaaatcatgcgacagaatccccctagccagcaggttagactttgttggtaaccgatcgttgatgagtctccacgcaaaaactgac 105  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43105278 agcaacacaaaaggacaaatcatgcgacagaatccccctagccagcaggttagactttgttggtaaccgatcgttgatgagcctccacgcaaaaactgac 43105377  T
Q  106 acattcaggggaacttgatggtgccacaccaaatccacaacactatctctatcagaagattgctaagcagttaataaattataagcactgcgaactgtgt 205  Q
    || ||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43105378 accttcaggggaacctaatggtgccacaccaaatccacaacactatctgtatcagaagattgctaagcagttaataaattataagcactgcaaactgtgt 43105477  T
Q  206 aaccacctgacggattcgcgagccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctc 305  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  43105478 aaccacctgacggattcgcaagccaaacccatctatctgaaacattcggaaacaaggaaacattaaagagtaacgccctacactctgctaacatctcctc 43105577  T
Q  306 ctcccattgccacaatctacgcctccacctccacaaatctccccattgttgtgaactagtagagaacaagtctgccaccggcaaagacttat 397  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  43105578 ctcccattgccacaacctgcgcctccacctccacaaatctccccattgttgcgaactagtagagaacaagtctgccaccgacaaagacttat 43105669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 226 - 338
Target Start/End: Complemental strand, 15653658 - 15653546
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    |||||||||||||||||||||||||||| |||||||  ||||||||  |||||  |||||||||| |||||||||||||||||||| |||||||||||||    
T  15653658 agccaaacccatctatctgaaacattcggaaacaagagaacatcaagaagtaaagccctacactccgctaacatctcctcctcccactgccacaatctac 15653559  T
Q  326 gcctccacctcca 338  Q
    |||||||||||||    
T  15653558 gcctccacctcca 15653546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 181 - 350
Target Start/End: Complemental strand, 12378723 - 12378557
Alignment:
Q  181 aaattataagcactgcgaactgtgtaaccacctgacggattcgcgagccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaaca 280  Q
    |||| ||||||||  ||||||||||| |||| |||||||| || |||||||||||| |||||| ||||||| | | ||| |||||||||||  |||        
T  12378723 aaatcataagcaccacgaactgtgtagccacatgacggatccgggagccaaacccagctatctaaaacattaggatacagggaaacatcaagaagtg--- 12378627  T
Q  281 ccctacactctgctaacatctcctcctcccattgccacaatctacgcctccacctccacaaatctcccca 350  Q
    |||||||||| |||||||||||||||||||| |||||||| || ||||||| |||| ||||||| |||||    
T  12378626 ccctacactccgctaacatctcctcctcccactgccacaacctgcgcctccgcctcaacaaatcccccca 12378557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 340
Target Start/End: Original strand, 45943008 - 45943152
Alignment:
Q  196 cgaactgtgtaaccacctgacggattcgcgagccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgcta 295  Q
    ||||||||||||||||| || || | ||  ||||| ||||| |||||||||||||| | |  ||| ||||||||||  |||||  ||||||||||  |||    
T  45943008 cgaactgtgtaaccaccagatgggtccggaagccacacccagctatctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcctcta 45943107  T
Q  296 acatctcctcctcccattgccacaatctacgcctccacctccaca 340  Q
     || |||||||||||| ||||| |||||||  |||||||||||||    
T  45943108 gcaactcctcctcccactgccataatctacatctccacctccaca 45943152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 46623892 - 46623967
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatct 301  Q
    |||||||||||| ||||||||||||||| | |||||  ||||||||  |||||  |||||||||||||||||||||    
T  46623892 agccaaacccatgtatctgaaacattcggagacaagataacatcaagaagtaaagccctacactctgctaacatct 46623967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 12378844 - 12378767
Alignment:
Q  60 ctttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaa 137  Q
    ||||||||||||||||||   ||||||||||||| |||||||||| || |||| |||||| || | ||||||||||||    
T  12378844 ctttgttggtaaccgatcacggatgagtctccacacaaaaactgataccttcaagggaacctggttgtgccacaccaa 12378767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 340
Target Start/End: Original strand, 13440210 - 13440354
Alignment:
Q  196 cgaactgtgtaaccacctgacggattcgcgagccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgcta 295  Q
    ||||||||||||||||| || || | ||  ||||| ||||| |||||||||||| | | |  ||||||||||||||  |||||  ||| ||||||  |||    
T  13440210 cgaactgtgtaaccaccagatgggtccggaagccacacccagctatctgaaacaataggattcaaggaaacatcaagaagtaaagcccaacactcatcta 13440309  T
Q  296 acatctcctcctcccattgccacaatctacgcctccacctccaca 340  Q
     || |||||||||||| | ||| || ||||| |||||||||||||    
T  13440310 gcaactcctcctcccactaccataaactacgtctccacctccaca 13440354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 15653830 - 15653747
Alignment:
Q  54 gttagactttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaa 137  Q
    ||||| |||||||||||| |||||   || ||||||||||||||||||||| || |||| |||||| || | ||||||||||||    
T  15653830 gttagtctttgttggtaaacgatcccggaggagtctccacgcaaaaactgataccttcaagggaacctgtttgtgccacaccaa 15653747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 46623730 - 46623803
Alignment:
Q  64 gttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaa 137  Q
    |||||||| |||||   |||||||||||||||||||||||| || |||| |||||| || | ||||||||||||    
T  46623730 gttggtaaacgatcccggatgagtctccacgcaaaaactgataccttcaagggaacctgtttgtgccacaccaa 46623803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 3104925 - 3105007
Alignment:
Q  60 ctttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcca 142  Q
    |||||||||||| |||||   ||||||  ||||| |||||||||| || |||| || ||| |||| |||||||||||||||||    
T  3104925 ctttgttggtaaacgatcacggatgagcatccacacaaaaactgaaaccttcaaggaaacctgattgtgccacaccaaatcca 3105007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 45942874 - 45942951
Alignment:
Q  62 ttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaat 139  Q
    |||||||||| |||||   |||||| |||||||| ||||| ||||| |||| |||||| || | ||||||||||||||    
T  45942874 ttgttggtaaacgatctcagatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccacaccaaat 45942951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 13440076 - 13440156
Alignment:
Q  62 ttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcca 142  Q
    |||||||||| |||||   || ||| |||||||||||||| || || |||| |||||| || | |||||||||||||||||    
T  13440076 ttgttggtaaacgatcacggaggagcctccacgcaaaaacggaaaccttcaagggaacctgtttgtgccacaccaaatcca 13440156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 339
Target Start/End: Original strand, 18671370 - 18671470
Alignment:
Q  239 tatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctacgcctccacctcca 338  Q
    ||||||||||||| | || ||| || | |||||| |||||| ||||||||||  ||||||   |||||||||||  |||||| ||||||| ||| |||||    
T  18671370 tatctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctaacaaagcctcctcccatgcccacaacctacgccgccaactcca 18671469  T
Q  339 c 339  Q
    |    
T  18671470 c 18671470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 45992818 - 45992870
Alignment:
Q  281 ccctacactctgctaacatctcctcctcccattgccacaatctacgcctccac 333  Q
    ||||||||||  |||||||||||||||||||   ||||||||| |||||||||    
T  45992818 ccctacactccactaacatctcctcctcccacgcccacaatctccgcctccac 45992870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 226 - 340
Target Start/End: Complemental strand, 10486873 - 10486759
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    |||||||||||||||||||||||||||| |||||||  ||||||||  |||||  |||||||||| |||||||| ||||||||||| |||||||| ||||    
T  10486873 agccaaacccatctatctgaaacattcggaaacaagagaacatcaagaagtaaagccctacactccgctaacatgtcctcctcccactgccacaacctac 10486774  T
Q  326 gcctccacctccaca 340  Q
    | |||||||||||||    
T  10486773 gtctccacctccaca 10486759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 338
Target Start/End: Original strand, 587702 - 587815
Alignment:
Q  225 gagccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatcta 324  Q
    |||||| || ||||||||||||||||| | | |||| ||||||||||  |||||  ||||||||||  ||||||| |||||||||||   ||| |  |||    
T  587702 gagccacactcatctatctgaaacattaggatacaaagaaacatcaagaagtaaagccctacactcctctaacatatcctcctcccacatccatagccta 587801  T
Q  325 cgcctccacctcca 338  Q
    ||||||||||||||    
T  587802 cgcctccacctcca 587815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 340
Target Start/End: Original strand, 34481134 - 34481248
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    ||||| ||||| ||||||| |||||| | |  ||||||||||||||  |||||  ||||||||||  ||| || | |||||||||| ||||| || ||||    
T  34481134 agccacacccagctatctgcaacattaggattcaaggaaacatcaagaagtaaagccctacactcctctagcaacccctcctcccactgccataacctac 34481233  T
Q  326 gcctccacctccaca 340  Q
    | |||||||||||||    
T  34481234 gtctccacctccaca 34481248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 32918339 - 32918421
Alignment:
Q  60 ctttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcca 142  Q
    |||||||||||| |||||   |||||| |||||||| ||||| ||||| |||| |||||| || | ||| |||||||||||||    
T  32918339 ctttgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgtcacaccaaatcca 32918421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 23923084 - 23923121
Alignment:
Q  274 agtaacaccctacactctgctaacatctcctcctccca 311  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  23923084 agtaacaacctacactccgctaacatctcctcctccca 23923121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 11574592 - 11574540
Alignment:
Q  281 ccctacactctgctaacatctcctcctcccattgccacaatctacgcctccac 333  Q
    ||||||||||  |||||||||||||||||||   ||||||||| |||||||||    
T  11574592 ccctacactcctctaacatctcctcctcccacgcccacaatctccgcctccac 11574540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 226 - 342
Target Start/End: Complemental strand, 8655026 - 8654910
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    |||||||||||||||||||||||||||| |||||||  ||||||||  |||||  |||||||||| |||||||  ||||||||||| |||||||| ||||    
T  8655026 agccaaacccatctatctgaaacattcggaaacaagagaacatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctac 8654927  T
Q  326 gcctccacctccacaaa 342  Q
    | |||||||||||||||    
T  8654926 gtctccacctccacaaa 8654910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 226 - 338
Target Start/End: Complemental strand, 7663192 - 7663080
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    |||||||||||| ||||||||||||||| ||||||   ||||||||  |||||  || |||||||  ||||||||||||||||||| |||||||||||||    
T  7663192 agccaaacccatgtatctgaaacattcggaaacaaaagaacatcaagaagtaaagccatacactccactaacatctcctcctcccactgccacaatctac 7663093  T
Q  326 gcctccacctcca 338  Q
    |||||||||||||    
T  7663092 gcctccacctcca 7663080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 228 - 340
Target Start/End: Original strand, 47541114 - 47541226
Alignment:
Q  228 ccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctacgc 327  Q
    ||||||| |||||||||||||||||| ||||||   ||||||||  |||||  |||||||||| |||||||||||||||| ||| |||||||| | |||     
T  47541114 ccaaacctatctatctgaaacattcggaaacaaaagaacatcaagaagtaaagccctacactccgctaacatctcctccttccactgccacaaacgacgt 47541213  T
Q  328 ctccacctccaca 340  Q
    |||||||||||||    
T  47541214 ctccacctccaca 47541226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 226 - 339
Target Start/End: Complemental strand, 3129932 - 3129822
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    |||||||||||||||||||||||||||| || ||||  ||||||||  |||||  |||||||||| |||||||||||   |||||| |||||||| | ||    
T  3129932 agccaaacccatctatctgaaacattcggaagcaagagaacatcaagaagtaaagccctacactccgctaacatctc---ctcccactgccacaaacaac 3129836  T
Q  326 gcctccacctccac 339  Q
    | ||||||||||||    
T  3129835 gtctccacctccac 3129822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 340
Target Start/End: Original strand, 2631555 - 2631699
Alignment:
Q  196 cgaactgtgtaaccacctgacggattcgcgagccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgcta 295  Q
    ||||||||||| ||||| || || | ||  ||||| ||||| |||||||||||||| | |  ||||||||||||||  |||||  ||||||||||  |||    
T  2631555 cgaactgtgtatccaccagatgggtccggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatcta 2631654  T
Q  296 acatctcctcctcccattgccacaatctacgcctccacctccaca 340  Q
     || |||||||||||| ||||| || ||||| |||||||||||||    
T  2631655 gcaactcctcctcccactgccataacctacgtctccacctccaca 2631699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 340
Target Start/End: Original strand, 55298777 - 55298921
Alignment:
Q  196 cgaactgtgtaaccacctgacggattcgcgagccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgcta 295  Q
    ||||||||||||||||| || || | ||  ||||| ||||| |||||||||||| | | |  ||||||||||||||  |||||  ||||||||||  |||    
T  55298777 cgaactgtgtaaccaccagatgggtccggaagccacacccagctatctgaaacaataggattcaaggaaacatcaagaagtaaagccctacactcatcta 55298876  T
Q  296 acatctcctcctcccattgccacaatctacgcctccacctccaca 340  Q
     || |||||||||||| ||||| || ||||| |||||||||||||    
T  55298877 gcaactcctcctcccactgccataaactacgtctccacctccaca 55298921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 340
Target Start/End: Complemental strand, 23873459 - 23873315
Alignment:
Q  196 cgaactgtgtaaccacctgacggattcgcgagccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgcta 295  Q
    ||||||||||||||||| || || | ||  ||||| ||||| |||||||||||| | | |  ||||||||||||||  |||||  ||||||||||  |||    
T  23873459 cgaactgtgtaaccaccagatgggtccggaagccacacccagctatctgaaacaataggattcaaggaaacatcaagaagtaaagccctacactcatcta 23873360  T
Q  296 acatctcctcctcccattgccacaatctacgcctccacctccaca 340  Q
     || |||||||||||| |||||  | ||||| |||||||||||||    
T  23873359 gcaactcctcctcccactgccattacctacgtctccacctccaca 23873315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 8655192 - 8655116
Alignment:
Q  60 ctttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacacca 136  Q
    |||||||||||||||||| | || ||||||||| ||||||||||| |  |||| |||||| |||| |||||||||||    
T  8655192 ctttgttggtaaccgatcctggaggagtctccaagcaaaaactgaaatcttcaagggaacctgattgtgccacacca 8655116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 340
Target Start/End: Original strand, 20675179 - 20675323
Alignment:
Q  196 cgaactgtgtaaccacctgacggattcgcgagccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgcta 295  Q
    ||||||||||| ||||| || || | ||  ||||| ||||| |||||||||||||| | |  ||||||||||||||  |||||   |||||||||  | |    
T  20675179 cgaactgtgtatccaccagatgggtccggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagtcctacactcatcaa 20675278  T
Q  296 acatctcctcctcccattgccacaatctacgcctccacctccaca 340  Q
     || |||||||||||| ||||| || ||||| |||||||||||||    
T  20675279 gcaactcctcctcccactgccataacctacgtctccacctccaca 20675323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 7663364 - 7663277
Alignment:
Q  54 gttagactttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcc 141  Q
    ||||| ||| |||||||| |||||   |||||||||||||||||||||||| || |||| || ||| || | ||||||||||||||||    
T  7663364 gttagtcttcgttggtaaacgatctcggatgagtctccacgcaaaaactgataccttcaaggaaacctgtttgtgccacaccaaatcc 7663277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 340
Target Start/End: Complemental strand, 8486934 - 8486820
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    ||||| ||||| |||||||||||||| | |  ||||||||||||||  |||||  |||||||||   ||| || ||||| |||||| ||||| || ||||    
T  8486934 agccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactaatctagcaactccttctcccactgccataacctac 8486835  T
Q  326 gcctccacctccaca 340  Q
    | |||||||||||||    
T  8486834 gtctccacctccaca 8486820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 328
Target Start/End: Original strand, 53810028 - 53810130
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    ||||| |||||| ||||||||||||| | || |||  |||||||||| ||||||  |||||||||  ||||||| || ||||||||   ||||||||| |    
T  53810028 agccatacccatttatctgaaacatttggaaccaacaaaacatcaaatagtaacgtcctacactcctctaacatatcttcctcccacgcccacaatctgc 53810127  T
Q  326 gcc 328  Q
    |||    
T  53810128 gcc 53810130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 8487079 - 8487018
Alignment:
Q  81 gatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcca 142  Q
    |||||| |||||||||||||| || || |||| |||||| || | |||||||||||||||||    
T  8487079 gatgagcctccacgcaaaaacagaaaccttcaagggaacctgtttgtgccacaccaaatcca 8487018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 333
Target Start/End: Original strand, 19647910 - 19648003
Alignment:
Q  240 atctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctacgcctccac 333  Q
    ||||||||||||   || ||| ||||||||||  || ||  ||||||||||  |||||||||||||||||||   ||||||||| |||||||||    
T  19647910 atctgaaacattaacaagcaaagaaacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaatctccgcctccac 19648003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 23873593 - 23873513
Alignment:
Q  62 ttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcca 142  Q
    |||||||||| |||||   || ||| |||||||||||||| || || |||| |||||| || | |||||||||||||||||    
T  23873593 ttgttggtaaacgatcacggaggagcctccacgcaaaaacggaaaccttcaagggaacctgtttgtgccacaccaaatcca 23873513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 55298643 - 55298723
Alignment:
Q  62 ttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcca 142  Q
    |||||||||| |||||   || ||| |||||||||||||| || || |||| |||||| || | |||||||||||||||||    
T  55298643 ttgttggtaaacgatcacggaggagcctccacgcaaaaacggaaaccttcaagggaacctgtttgtgccacaccaaatcca 55298723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 226 - 338
Target Start/End: Original strand, 7862 - 7974
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    |||||||||||| ||||||||||||||| ||||||   ||||||||  |||||  || |||||||  ||||||||||||||||||| |||||||||||||    
T  7862 agccaaacccatgtatctgaaacattcggaaacaaaagaacatcaagaagtaaagccatacactccactaacatctcctcctcccactgccacaatctac 7961  T
Q  326 gcctccacctcca 338  Q
    |||||||||||||    
T  7962 gcctccacctcca 7974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 7690 - 7777
Alignment:
Q  54 gttagactttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcc 141  Q
    ||||| ||| |||||||| |||||   |||||||||||||||||||||||| || |||| || ||| || | ||||||||||||||||    
T  7690 gttagtcttcgttggtaaacgatctcggatgagtctccacgcaaaaactgataccttcaaggaaacctgtttgtgccacaccaaatcc 7777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 226 - 338
Target Start/End: Original strand, 7452539 - 7452651
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    |||||||||||||||||||||||||||| |||||||  ||||||||  |||||  ||||||||||  |||| | | |||||||||| |||||||||||||    
T  7452539 agccaaacccatctatctgaaacattcggaaacaagagaacatcaagaagtaaagccctacactcctctaataacacctcctcccactgccacaatctac 7452638  T
Q  326 gcctccacctcca 338  Q
    |||||||||||||    
T  7452639 gcctccacctcca 7452651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 226 - 317
Target Start/End: Complemental strand, 19384663 - 19384572
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgcca 317  Q
    |||||||||||||||||||||||| ||| |||||||  ||||||||  |||||  ||||||||||  ||||||||||||||||||| |||||    
T  19384663 agccaaacccatctatctgaaacactcggaaacaagagaacatcaagaagtaaagccctacactccactaacatctcctcctcccactgcca 19384572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 340
Target Start/End: Complemental strand, 16420993 - 16420849
Alignment:
Q  196 cgaactgtgtaaccacctgacggattcgcgagccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgcta 295  Q
    |||||||||| |||||| || || | ||  ||||| ||||| |||||||||||||| | |  |||||||||||| |  |||||  |||||| |||  |||    
T  16420993 cgaactgtgtgaccaccagatgggtccggaagccacacccagctatctgaaacattaggattcaaggaaacatcgagaagtaaagccctacgctcatcta 16420894  T
Q  296 acatctcctcctcccattgccacaatctacgcctccacctccaca 340  Q
     || |||||||||||| ||||| || ||||| |||||||||||||    
T  16420893 gcaactcctcctcccactgccataacctacgtctccacctccaca 16420849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 7452368 - 7452450
Alignment:
Q  55 ttagactttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaa 137  Q
    |||| ||| |||||||||||||| |||| ||||||||| ||||||||||| || |||| |||||| || | |||||| |||||    
T  7452368 ttagtcttcgttggtaaccgatccttgaggagtctccatgcaaaaactgaaaccttcaagggaacctgtttgtgccaaaccaa 7452450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 2872213 - 2872293
Alignment:
Q  62 ttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcca 142  Q
    |||||||||| |||||   |||||| |||||||||||||| || || || | |||||| || | |||||||||||||||||    
T  2872213 ttgttggtaaacgatcacggatgagcctccacgcaaaaacggaaacctttaagggaacctgtttgtgccacaccaaatcca 2872293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 226 - 338
Target Start/End: Original strand, 45421706 - 45421818
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    |||||||||||| ||||||||||||||| ||||||   ||||||||  || ||  |||||||||| |||||||||||||||||||| ||| |||||||||    
T  45421706 agccaaacccatgtatctgaaacattcggaaacaaaagaacatcaagaagaaaagccctacactccgctaacatctcctcctcccactgcgacaatctac 45421805  T
Q  326 gcctccacctcca 338  Q
    |||||||||||||    
T  45421806 gcctccacctcca 45421818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 175 - 350
Target Start/End: Complemental strand, 31085641 - 31085466
Alignment:
Q  175 gttaataaattataagcactgcgaactgtgtaaccacctgacggattcgcgagccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaaga 274  Q
    ||||| ||| |||| ||||  |||| |||||| |||||||||||||| |  ||||| ||||| |||||||||||||| | |  ||||||||||||||  |    
T  31085641 gttaacaaactatatgcaccacgaattgtgtagccacctgacggatttggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaa 31085542  T
Q  275 gtaacaccctacactctgctaacatctcctcctcccattgccacaatctacgcctccacctccacaaatctcccca 350  Q
    ||||  |||||||||||||||||| |||||||||||| || ||||| || |  ||||||||||||| ||| |||||    
T  31085541 gtaaagccctacactctgctaacagctcctcctcccactgtcacaacctgcatctccacctccacacatcccccca 31085466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 340
Target Start/End: Original strand, 33548029 - 33548173
Alignment:
Q  196 cgaactgtgtaaccacctgacggattcgcgagccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgcta 295  Q
    ||||||||||||||||| || || | ||  ||||| ||||| |||||||||||| | | |  ||||||||||||||  |||||  ||||||||||  |||    
T  33548029 cgaactgtgtaaccaccagatgggtccggaagccacacccagctatctgaaacaataggattcaaggaaacatcaagaagtaaagccctacactcatcta 33548128  T
Q  296 acatctcctcctcccattgccacaatctacgcctccacctccaca 340  Q
     || |||||||||||| ||||| || ||||| |||||||||||||    
T  33548129 gcaactcctcctcccactgccataacctacgtctccacctccaca 33548173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 340
Target Start/End: Original strand, 43627656 - 43627800
Alignment:
Q  196 cgaactgtgtaaccacctgacggattcgcgagccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgcta 295  Q
    ||||||||||| ||||| || || | ||  ||||| ||||| |||||||||||||| | |  ||||||||||||||  |||||  ||||||||||  |||    
T  43627656 cgaactgtgtatccaccagatgggtccggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatcta 43627755  T
Q  296 acatctcctcctcccattgccacaatctacgcctccacctccaca 340  Q
     || |||||||||||| ||||| || ||||| |||||||||||||    
T  43627756 gcaactcctcctcccactgccataacctacgtctccacctccaca 43627800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 45421534 - 45421621
Alignment:
Q  54 gttagactttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcc 141  Q
    ||||| ||| |||||||| ||||| | ||||||||||||| |||||||||| || |||| |||||| || | ||| ||||||||||||    
T  45421534 gttagtcttcgttggtaaacgatcctggatgagtctccacacaaaaactgataccttcaagggaacctgtttgtgtcacaccaaatcc 45421621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 317
Target Start/End: Original strand, 22052784 - 22052905
Alignment:
Q  196 cgaactgtgtaaccacctgacggattcgcgagccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgcta 295  Q
    ||||||||||||||||| || || | ||  ||||| ||||| |||||||||||||| | |  ||| ||||||||||  |||||  ||||||||||  |||    
T  22052784 cgaactgtgtaaccaccagaggggtccggaagccacacccagctatctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcctcta 22052883  T
Q  296 acatctcctcctcccattgcca 317  Q
     || |||||||||||| |||||    
T  22052884 gcaactcctcctcccactgcca 22052905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 22052650 - 22052730
Alignment:
Q  62 ttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcca 142  Q
    |||||||||| |||||   |||||| |||||||| ||||| ||||| |||| |||||| || | |||||||||||||||||    
T  22052650 ttgttggtaaacgatcacggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccacaccaaatcca 22052730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 26180046 - 26179964
Alignment:
Q  60 ctttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcca 142  Q
    ||||||||||||||||||   ||||||  |||||||||||||||| || ||||  ||||  |||| || ||||||||||||||    
T  26180046 ctttgttggtaaccgatcacggatgagcatccacgcaaaaactgataccttcaacggaatatgattgtaccacaccaaatcca 26179964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 31774871 - 31774953
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctc 308  Q
    ||||| |||||||||||||||||||| | | |||| ||||||||||  |||||  || ||||||| || | ||||||||||||    
T  31774871 agccacacccatctatctgaaacattaggagacaaagaaacatcaagaagtaaggccttacactccgccaccatctcctcctc 31774953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 333
Target Start/End: Original strand, 15017877 - 15017970
Alignment:
Q  240 atctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctacgcctccac 333  Q
    ||||||||||||   || ||| ||||||||||| || |   ||||||||||  |||||||||||||||||||   ||||||||| |||||||||    
T  15017877 atctgaaacattaacaagcaaagaaacatcaaacagaagagccctacactcctctaacatctcctcctcccacacccacaatctccgcctccac 15017970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 43627522 - 43627602
Alignment:
Q  62 ttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcca 142  Q
    |||||||||| |||||   |||||| |||||||||||||| || || || | |||||| || | |||||||||||||||||    
T  43627522 ttgttggtaaacgatcacggatgagcctccacgcaaaaacggaaacctttaagggaacctgtttgtgccacaccaaatcca 43627602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 226 - 340
Target Start/End: Complemental strand, 49731885 - 49731771
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    |||||||||||||||||||||||||||  |||||||  ||||||||  |||||  |||||||||| || |||| |||||||||||| |||||||| ||||    
T  49731885 agccaaacccatctatctgaaacattcagaaacaagagaacatcaagaagtaaagccctacactccgccaacaactcctcctcccactgccacaaactac 49731786  T
Q  326 gcctccacctccaca 340  Q
    | |||||||||||||    
T  49731785 gtctccacctccaca 49731771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 61 - 350
Target Start/End: Original strand, 9379119 - 9379408
Alignment:
Q  61 tttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatccacaacactatctctatcag 160  Q
    ||||||||||| |||||   |||||| ||||||||||||||||| || |||| |  ||| |||  ||||||||||||||||| | ||  |||   | |||    
T  9379119 tttgttggtaaacgatcacagatgagcctccacgcaaaaactgataccttcaagaaaacctgactgtgccacaccaaatccaaagcagaatcctcaccag 9379218  T
Q  161 aagattgctaagcagttaataaattataagcactgcgaactgtgtaaccacctgacggattcgcgagccaaacccatctatctgaaacattcgaaaacaa 260  Q
    ||| || || ||  ||||| |||| ||| ||||  |||||  | || || ||||||| || ||  |||||   |||| ||||||||||||| | | ||||    
T  9379219 aaggttcctgagaggttaacaaatcatatgcaccacgaacattatagccccctgacgaatccggcagccacgtccatgtatctgaaacattgggatacaa 9379318  T
Q  261 ggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctacgcctccacctccacaaatctcccca 350  Q
    |||||||||||  |||||  |||||||||| ||||||||| |||||||||| ||||| || || |||||||||||||||||||| |||||    
T  9379319 ggaaacatcaagtagtaatgccctacactccgctaacatcccctcctcccactgccataacctgcgcctccacctccacaaatcccccca 9379408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 226 - 338
Target Start/End: Complemental strand, 30167298 - 30167185
Alignment:
Q  226 agccaaacccatctatctgaaacattcga-aaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatcta 324  Q
    |||||||||||  |||||||||||||||  ||||||   ||||||||  |||||   ||||||||| |||||||||||||||||||| ||||||||||||    
T  30167298 agccaaacccaagtatctgaaacattcggcaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatcta 30167199  T
Q  325 cgcctccacctcca 338  Q
    ||||||||||||||    
T  30167198 cgcctccacctcca 30167185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 340
Target Start/End: Complemental strand, 2813453 - 2813339
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    ||||| ||||| |||||||||||||| | |  ||||||||||||||  |||||  ||||||||||  ||| || |||||||||||| ||||| || ||||    
T  2813453 agccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctac 2813354  T
Q  326 gcctccacctccaca 340  Q
    | |||||||||||||    
T  2813353 gtctccacctccaca 2813339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 340
Target Start/End: Original strand, 29309595 - 29309709
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    ||||| ||||| |||||||||||||| | |  ||| ||||||||||  |||||| ||||||||||  ||| || |||||||||||| ||||| || ||||    
T  29309595 agccacacccaactatctgaaacattaggattcaatgaaacatcaagaagtaacgccctacactcatctagcaactcctcctcccactgccataacctac 29309694  T
Q  326 gcctccacctccaca 340  Q
    | |||||||||||||    
T  29309695 gtctccacctccaca 29309709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 30167470 - 30167383
Alignment:
Q  54 gttagactttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcc 141  Q
    ||||| ||| |||||||| |||||   || ||||||||||||||||||||| ||||||| |||||| || | ||||||||||||||||    
T  30167470 gttagtcttcgttggtaatcgatcacggaggagtctccacgcaaaaactgaaacattcaagggaacctgtttgtgccacaccaaatcc 30167383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 226 - 340
Target Start/End: Original strand, 23601960 - 23602074
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    ||||| ||||| |||||||||||||| | |  ||||||||||||||  |||||  ||||||||||  ||| || |||||||||||| ||||| || |||     
T  23601960 agccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctat 23602059  T
Q  326 gcctccacctccaca 340  Q
    | |||||||||||||    
T  23602060 gtctccacctccaca 23602074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 2813617 - 2813537
Alignment:
Q  62 ttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcca 142  Q
    |||||||||| |||||   |||||| |||||||||||||| || || |||| |||||| || | |||||||||||||||||    
T  2813617 ttgttggtaaacgatcacggatgagcctccacgcaaaaacggaaaccttcaagggaacctgtttgtgccacaccaaatcca 2813537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 340
Target Start/End: Complemental strand, 6176431 - 6176317
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    ||||| |||||  ||||||||||||| | |  ||| ||||||||||  |||||  ||||||||||  ||| || |||||||||||| ||| | || ||||    
T  6176431 agccacacccagttatctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgctataacctac 6176332  T
Q  326 gcctccacctccaca 340  Q
    | |||||||||||||    
T  6176331 gtctccacctccaca 6176317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 332
Target Start/End: Complemental strand, 25873061 - 25872955
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    ||||| ||||| ||||||| |||||| | |  ||||||||||||||| |||||  ||||||||||  ||| || | |||||||||| ||||| || ||||    
T  25873061 agccacacccagctatctgcaacattaggattcaaggaaacatcaaaaagtaaagccctacactcctctagcaacccctcctcccactgccataacctac 25872962  T
Q  326 gcctcca 332  Q
    | |||||    
T  25872961 gtctcca 25872955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 23601796 - 23601876
Alignment:
Q  62 ttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcca 142  Q
    |||||||||| |||||   |||||| |||||||||||||| || || | || |||||| || | |||||||||||||||||    
T  23601796 ttgttggtaaacgatcacggatgagcctccacgcaaaaacagaaacctccaagggaacctgtttgtgccacaccaaatcca 23601876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 226 - 340
Target Start/End: Complemental strand, 48265671 - 48265557
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    |||||||| ||| ||||||||||||||| |||||||  ||||||||  |||||  |||||||||| ||||||| |||||||||||| |||||||| ||||    
T  48265671 agccaaactcatatatctgaaacattcggaaacaagagaacatcaagaagtaaagccctacactccgctaacaactcctcctcccactgccacaacctac 48265572  T
Q  326 gcctccacctccaca 340  Q
    | |||||||||||||    
T  48265571 gtctccacctccaca 48265557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 229 - 338
Target Start/End: Original strand, 36305974 - 36306083
Alignment:
Q  229 caaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctacgcc 328  Q
    ||||||||| ||||||||||||||| ||||||   || |||||  |||||  ||||||||||  ||||||||||||||| ||| ||||||||||||||||    
T  36305974 caaacccatatatctgaaacattcggaaacaatagaatatcaagaagtaaagccctacactcctctaacatctcctccttccactgccacaatctacgcc 36306073  T
Q  329 tccacctcca 338  Q
    ||||||||||    
T  36306074 tccacctcca 36306083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 226 - 340
Target Start/End: Complemental strand, 30970561 - 30970447
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    ||||| |||||| ||||||||||||| | | |||| ||||||||||  |||||  |||||||||| || | |||||||||||||||   |||||||||||    
T  30970561 agccacacccatttatctgaaacattaggagacaaagaaacatcaagaagtaaggccctacactccgccaccatctcctcctcccacgcccacaatctac 30970462  T
Q  326 gcctccacctccaca 340  Q
    |||||||||||||||    
T  30970461 gcctccacctccaca 30970447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 226 - 340
Target Start/End: Complemental strand, 32353250 - 32353136
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    ||||| ||||| |||||||||||||| | |  ||||||||||||||  |||||  ||||||||||  ||| || |||||||| ||| ||||| || ||||    
T  32353250 agccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctccttccactgccataacctac 32353151  T
Q  326 gcctccacctccaca 340  Q
    | |||||||||||||    
T  32353150 gtctccacctccaca 32353136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 340
Target Start/End: Complemental strand, 48073414 - 48073270
Alignment:
Q  196 cgaactgtgtaaccacctgacggattcgcgagccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgcta 295  Q
    ||||||||||||||||| || || | ||  ||||| ||||| |||||||||||| | | |  ||||||||||||||  |||||  ||| ||||||  |||    
T  48073414 cgaactgtgtaaccaccagatgggtccggaagccacacccagctatctgaaacaataggattcaaggaaacatcaagaagtaaagccccacactcatcta 48073315  T
Q  296 acatctcctcctcccattgccacaatctacgcctccacctccaca 340  Q
     || |||||||||||| | ||| || ||||| |||||||||||||    
T  48073314 gcaactcctcctcccactcccataacctacgtctccacctccaca 48073270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 353
Target Start/End: Original strand, 21528348 - 21528479
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctac----actctgctaacatctcctcctcccattgccacaat 321  Q
    |||||||||| ||||||||||||||||| |||||||  ||||||||  |||||  ||||||     | | |||||||| ||||||||||| | ||| ||     
T  21528348 agccaaacccgtctatctgaaacattcggaaacaagagaacatcaagaagtaaagccctacgtctccaccgctaacatgtcctcctcccactaccataac 21528447  T
Q  322 ctacgcctccacctccacaaatctccccattg 353  Q
    ||||| ||||||||||||| | | ||||||||    
T  21528448 ctacgtctccacctccacataaccccccattg 21528479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 36929183 - 36929265
Alignment:
Q  55 ttagactttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaa 137  Q
    |||| ||| |||||||||||||| |||| ||||||||| ||||||||||| || |||| |||||| || | |||||| |||||    
T  36929183 ttagtcttcgttggtaaccgatccttgaggagtctccatgcaaaaactgaaaccttcaagggaacctgtttgtgccaaaccaa 36929265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 36305810 - 36305882
Alignment:
Q  65 ttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaa 137  Q
    |||||||||||||  ||| ||||||||||||||||||||| || |||| |||||| || | |||||| |||||    
T  36305810 ttggtaaccgatccctgaggagtctccacgcaaaaactgaaaccttcaagggaacctgtttgtgccaaaccaa 36305882  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 340
Target Start/End: Original strand, 37530785 - 37530867
Alignment:
Q  258 caaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctacgcctccacctccaca 340  Q
    ||||||||||||||  |||||  ||||||||||  ||| || | |||||||||| ||||| || ||||| |||||||||||||    
T  37530785 caaggaaacatcaagaagtaaagccctacactcctctagcaacccctcctcccactgccataacctacgtctccacctccaca 37530867  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 333
Target Start/End: Complemental strand, 25504932 - 25504839
Alignment:
Q  240 atctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctacgcctccac 333  Q
    ||||||||||||   || ||| ||||||||||  || ||  ||||||||||  |||||||||||||||||||   ||||||||| |||||||||    
T  25504932 atctgaaacattaacaagcaacgaaacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaatctccgcctccac 25504839  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 32353414 - 32353334
Alignment:
Q  62 ttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcca 142  Q
    |||||||||| |||||   |||||| |||||||||||||| || || |||| |||||| || | ||||||||| |||||||    
T  32353414 ttgttggtaaacgatcacggatgagcctccacgcaaaaacggaaaccttcaagggaacctgtttgtgccacactaaatcca 32353334  T

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Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 229 - 320
Target Start/End: Original strand, 33630287 - 33630378
Alignment:
Q  229 caaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaa 320  Q
    ||||||||||||||||||||||||| |||||||  ||||||||| | |||  |||||||||| |||||||||||||||||||| ||||||||    
T  33630287 caaacccatctatctgaaacattcggaaacaagagaacatcaaaaaataaagccctacactccgctaacatctcctcctcccactgccacaa 33630378  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 196 - 340
Target Start/End: Original strand, 15673982 - 15674126
Alignment:
Q  196 cgaactgtgtaaccacctgacggattcgcgagccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgcta 295  Q
    ||||||||||||||||| || || | ||  ||||| ||||| |||||||||||||| | |  ||||||||||||||  |||||  |||| |||||  |||    
T  15673982 cgaactgtgtaaccaccagatgggtccggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctgcactcatcta 15674081  T
Q  296 acatctcctcctcccattgccacaatctacgcctccacctccaca 340  Q
     || |||||||||||| |||||||| ||||| |||||||||||||    
T  15674082 gcaactcctcctcccactgccacaacctacgtctccacctccaca 15674126  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 340
Target Start/End: Complemental strand, 23347450 - 23347306
Alignment:
Q  196 cgaactgtgtaaccacctgacggattcgcgagccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgcta 295  Q
    ||||||||||| ||||| || || | ||  ||||| ||||| |||||||||||||| | |  ||||||||||||||  |||||  ||||||||||  |||    
T  23347450 cgaactgtgtatccaccagatgggtccggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatcta 23347351  T
Q  296 acatctcctcctcccattgccacaatctacgcctccacctccaca 340  Q
     || |||||||||||| ||||| || ||||| |||||||||||||    
T  23347350 gcaactcctcctcccactgccataacctacgtctccacctccaca 23347306  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 196 - 350
Target Start/End: Original strand, 25318011 - 25318165
Alignment:
Q  196 cgaactgtgtaaccacctgacggattcgcgagccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgcta 295  Q
    ||||| ||||||||||| || || | ||  ||||| ||| | |||||||||||||| | |  ||| ||||||||||  |||||  ||||||||||  |||    
T  25318011 cgaacagtgtaaccaccagatgggtccggaagccacacctagctatctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcctcta 25318110  T
Q  296 acatctcctcctcccattgccacaatctacgcctccacctccacaaatctcccca 350  Q
     || |||||||||||| ||||| || |||||  |||||||||||||||| |||||    
T  25318111 gcaactcctcctcccactgccataacctacgtatccacctccacaaatcccccca 25318165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 196 - 350
Target Start/End: Original strand, 26205505 - 26205659
Alignment:
Q  196 cgaactgtgtaaccacctgacggattcgcgagccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgcta 295  Q
    ||||| ||||||||||| || || | ||  ||||| ||| | |||||||||||||| | |  ||| ||||||||||  |||||  ||||||||||  |||    
T  26205505 cgaacagtgtaaccaccagatgggtccggaagccacacctagctatctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcctcta 26205604  T
Q  296 acatctcctcctcccattgccacaatctacgcctccacctccacaaatctcccca 350  Q
     || |||||||||||| ||||| || |||||  |||||||||||||||| |||||    
T  26205605 gcaactcctcctcccactgccataacctacgtatccacctccacaaatcccccca 26205659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 309
Target Start/End: Original strand, 1683227 - 1683310
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcc 309  Q
    ||||||||| |||||||||||||||||| ||| ||   ||||||||  |||||  |||||||||| |||||||||||| |||||    
T  1683227 agccaaaccaatctatctgaaacattcggaaataatagaacatcaagaagtaaagccctacactccgctaacatctccacctcc 1683310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 25317896 - 25317957
Alignment:
Q  81 gatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcca 142  Q
    |||||| |||||||||||||| ||||| |||| |||||| || | |||||||||||||||||    
T  25317896 gatgagcctccacgcaaaaacggacaccttcaagggaacctgtttgtgccacaccaaatcca 25317957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 26205390 - 26205451
Alignment:
Q  81 gatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcca 142  Q
    |||||| |||||||||||||| ||||| |||| |||||| || | |||||||||||||||||    
T  26205390 gatgagcctccacgcaaaaacggacaccttcaagggaacctgtttgtgccacaccaaatcca 26205451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 15673848 - 15673928
Alignment:
Q  62 ttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcca 142  Q
    |||||||||| |||||   |||||| |||||||||||||| ||| | |||| |||||| || | |||||||||||||||||    
T  15673848 ttgttggtaaacgatcccggatgagcctccacgcaaaaacggaccccttcaagggaacctgcttgtgccacaccaaatcca 15673928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 19255882 - 19255934
Alignment:
Q  281 ccctacactctgctaacatctcctcctcccattgccacaatctacgcctccac 333  Q
    ||||||||||  |||||||||||||||||||   ||||||||| |||||||||    
T  19255882 ccctacactccactaacatctcctcctcccacgcccacaatctccgcctccac 19255934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 23347583 - 23347503
Alignment:
Q  62 ttgttggtaaccgatcgttgatgagtctccacgcaaaaactgacacattcaggggaacttgatggtgccacaccaaatcca 142  Q
    |||||||||| |||||   |||||| ||||||||||||||  | || |||| |||||| || | |||||||||||||||||    
T  23347583 ttgttggtaaacgatcacggatgagcctccacgcaaaaacgaaaaccttcaagggaacctgtttgtgccacaccaaatcca 23347503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 33640160 - 33640212
Alignment:
Q  281 ccctacactctgctaacatctcctcctcccattgccacaatctacgcctccac 333  Q
    ||||||||||  |||||||||||||||||||   ||||||||| |||||||||    
T  33640160 ccctacactccactaacatctcctcctcccacgcccacaatctccgcctccac 33640212  T

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Target: scaffold0029 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 383
Target Start/End: Complemental strand, 134769 - 134650
Alignment:
Q  264 aacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctacgcctccacctccacaaatctccccattgttgtgaacta 363  Q
    ||||||||  |||||  |||||||||| |||||||  ||||||||||| |||||||| ||||| ||||||||||||||| | ||||| || |  |||  |    
T  134769 aacatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatca 134670  T
Q  364 gtagagaacaagtctgccac 383  Q
     |||| ||||||||||||||    
T  134669 atagataacaagtctgccac 134650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 383
Target Start/End: Complemental strand, 312596 - 312477
Alignment:
Q  264 aacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctacgcctccacctccacaaatctccccattgttgtgaacta 363  Q
    ||||||||  |||||  |||||||||| |||||||  ||||||||||| |||||||| ||||| ||||||||||||||| | ||||| || |  |||  |    
T  312596 aacatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatca 312497  T
Q  364 gtagagaacaagtctgccac 383  Q
     |||| ||||||||||||||    
T  312496 atagataacaagtctgccac 312477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 383
Target Start/End: Complemental strand, 328050 - 327931
Alignment:
Q  264 aacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctacgcctccacctccacaaatctccccattgttgtgaacta 363  Q
    ||||||||  |||||  |||||||||| |||||||  ||||||||||| |||||||| ||||| ||||||||||||||| | ||||| || |  |||  |    
T  328050 aacatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatca 327951  T
Q  364 gtagagaacaagtctgccac 383  Q
     |||| ||||||||||||||    
T  327950 atagataacaagtctgccac 327931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 339
Target Start/End: Complemental strand, 15603 - 15490
Alignment:
Q  226 agccaaacccatctatctgaaacattcgaaaacaaggaaacatcaaagagtaacaccctacactctgctaacatctcctcctcccattgccacaatctac 325  Q
    ||||| |||||| |||||||||| || | || |||  |||||||||| |||||  ||||||||||  ||||||| |||||||||||   ||||||||| |    
T  15603 agccagacccatttatctgaaacgtttggaaccaacaaaacatcaaatagtaaagccctacactcctctaacatatcctcctcccacgcccacaatctgc 15504  T
Q  326 gcctccacctccac 339  Q
    | | ||||||||||    
T  15503 gacgccacctccac 15490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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