View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_low_21 (Length: 372)
Name: NF19857_low_21
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 43011156 - 43011513
Alignment:
| Q |
1 |
gttttgttcactgtcctttgtttgaagcagcacgcaacactgtgtgtccctccatagcacgccactattttactgtttttgcaccgtcggatcaatcaaa |
100 |
Q |
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| T |
43011156 |
gttttgttgactgtcctttgtttgaagcagcacgcaacactgtgtgtccctccatagcacgccactcttttactgtttttgcaccgtcggatcaatcaaa |
43011255 |
T |
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| Q |
101 |
cgactcagaaacagccacgtggtactctctttatatttagacaataaaatattgtgaaacacataattcacgtgagagagaactctcacattttcacaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43011256 |
cgactcagaaacagccacgtggtactctctttatatttagacaataaaatattgtgaaacacataattcacgtgagagagaactctcacattttcacaca |
43011355 |
T |
|
| Q |
201 |
cattattacaatttacaacacaatgatgacagaaaaattatgaatttgtttcgctcctaatttgaaactcaaattcatatcataatacactcgtaaaatg |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43011356 |
cattataacaatttacaacacaatgatgacagaaaaattatgaatttgtttcgctcctaatttgaaactcaaattcatatcataatacactcgtaaaatg |
43011455 |
T |
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| Q |
301 |
attttcccttatttatacaagcattgagtagtactcaatccctcaaaaatttcctcta |
358 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43011456 |
attttcccttatttatacaagcattgagtagtactcactccctcaaaaatttcctcta |
43011513 |
T |
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