View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19857_low_24 (Length: 359)

Name: NF19857_low_24
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19857_low_24
NF19857_low_24
[»] chr8 (2 HSPs)
chr8 (149-298)||(1787657-1787806)
chr8 (1-112)||(1787509-1787620)
[»] chr1 (2 HSPs)
chr1 (1-112)||(46280533-46280644)
chr1 (175-224)||(46280720-46280769)
[»] chr2 (1 HSPs)
chr2 (3-97)||(30779271-30779365)
[»] chr3 (1 HSPs)
chr3 (1-97)||(55405570-55405666)
[»] chr5 (3 HSPs)
chr5 (42-97)||(1834727-1834782)
chr5 (42-97)||(40320198-40320253)
chr5 (42-97)||(41407314-41407369)
[»] chr4 (1 HSPs)
chr4 (42-97)||(24228191-24228246)
[»] chr6 (1 HSPs)
chr6 (1-72)||(943866-943937)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 149 - 298
Target Start/End: Original strand, 1787657 - 1787806
Alignment:
Q  149 cgaaggaaaaccgataagagtcgctgaaaaccggtgactcggccggtttaggagccaatcggtttaacaaactttgaatgcttattattattaattaatt 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1787657 cgaaggaaaaccgataagagtcgctgaaaaccggtgactcggccggtttaggagccaatcggtttaacaaactttgaatgcttattattattaattaatt 1787756  T
Q  249 agattaaacgtggtgagtttcctatgtgactacaacaatttagctagctg 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1787757 agattaaacgtggtgagtttcctatgtgactacaacaatttagctagctg 1787806  T

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Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 1787509 - 1787620
Alignment:
Q  1 aaatctcaaattttagtgttaaaatggcttggattagtggttttcatgttttgggttatgtgggtcttcaaccgggtcgaactgacccgtataaagggtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1787509 aaatctcaaattttagtgttaaaatggcttggattagtggttttcatgttttgggttatgtgggtcttcaaccgggtcgaactgacccgtataaagggtt 1787608  T
Q  101 gaagacgaaatt 112  Q
    ||||||||||||    
T  1787609 gaagacgaaatt 1787620  T

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Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 46280533 - 46280644
Alignment:
Q  1 aaatctcaaattttagtgttaaaatggcttggattagtggttttcatgttttgggttatgtgggtcttcaaccgggtcgaactgacccgtataaagggtt 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  46280533 aaatctcaaattttagtgttaaaatggtttggattagtggtttttatgttttgggttatgtgggtcttcaacttggtcgaactgacccgtataaagggtt 46280632  T
Q  101 gaagacgaaatt 112  Q
    ||||| ||||||    
T  46280633 gaagatgaaatt 46280644  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 46280720 - 46280769
Alignment:
Q  175 aaaaccggtgactcggccggtttaggagccaatcggtttaacaaactttg 224  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  46280720 aaaatcggtgactcggccggtttaggagtcaatcggtttaacaaactttg 46280769  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 30779271 - 30779365
Alignment:
Q  3 atctcaaattttagtgttaaaatggcttggattagtggttttcatgttttgggttatgtgggtcttcaaccgggtcgaactgacccgtataaagg 97  Q
    |||||||||||  |||||||||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  30779271 atctcaaatttcggtgttaaaatggcttgaattagtgattttcatgttttgtgttacgtgggtcttcaaccgggtcgaactgacccgtatgaagg 30779365  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 55405666 - 55405570
Alignment:
Q  1 aaatctcaaattttagtgttaaaatggcttggattagtggttttcatgttttgggttatgtgggtcttcaaccgggtcgaactgacccgtataaagg 97  Q
    |||||||||||||  |||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| |||| |||| ||||    
T  55405666 aaatctcaaatttcggtgttaaaatggcttgaattaatggttttcatgttttgggttacgtgggtcttcaaccgggtcgaacggacctgtatgaagg 55405570  T

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Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 1834782 - 1834727
Alignment:
Q  42 tttcatgttttgggttatgtgggtcttcaaccgggtcgaactgacccgtataaagg 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1834782 tttcatgttttgggttatgtgggtcttcaaccgggtcgaactgacccatataaagg 1834727  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 40320253 - 40320198
Alignment:
Q  42 tttcatgttttgggttatgtgggtcttcaaccgggtcgaactgacccgtataaagg 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40320253 tttcatgttttgggttatgtgggtcttcaaccgggtcgaactgacccatataaagg 40320198  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 41407314 - 41407369
Alignment:
Q  42 tttcatgttttgggttatgtgggtcttcaaccgggtcgaactgacccgtataaagg 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41407314 tttcatgttttgggttatgtgggtcttcaaccgggtcgaactgacccatataaagg 41407369  T

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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 24228191 - 24228246
Alignment:
Q  42 tttcatgttttgggttatgtgggtcttcaaccgggtcgaactgacccgtataaagg 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24228191 tttcatgttttgggttatgtgggtcttcaaccgggtcgaactgacccatataaagg 24228246  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 943937 - 943866
Alignment:
Q  1 aaatctcaaattttagtgttaaaatggcttggattagtggttttcatgttttgggttatgtgggtcttcaac 72  Q
    |||||||||||||||||||||| ||| |||| |||| |||||||||||||||| |||| || ||||||||||    
T  943937 aaatctcaaattttagtgttaacatgacttgaattaatggttttcatgttttgagttacgtaggtcttcaac 943866  T

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