View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_low_25 (Length: 359)
Name: NF19857_low_25
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 35632790 - 35632458
Alignment:
| Q |
18 |
caagcagctgaaattgttcaaaagaatccaagaaatgtatgtatatatccatatctatgacttgttcttttcttggtttttccttttgtattgtgaaaaa |
117 |
Q |
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| T |
35632790 |
caagcagctgaaattgttcaaaagaatccaagaaatgtatgtatatatccatatctatgacttgttcttttcttggtttttccttttgtattgtgaaaaa |
35632691 |
T |
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| Q |
118 |
acacaggcttgtttagtcttaagaaaatgaaaataattctgtgnnnnnnnatcgatgacgaatttgagtcttcactagaggttatgctatgattgatttt |
217 |
Q |
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| T |
35632690 |
acacgggcttgtttagtcttaagaaaatgaaaataattctgtgtttttttatcgatgacgaatttgagtctttactagaggttatgctatgattgatttt |
35632591 |
T |
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| Q |
218 |
gcagggagttgcgaaaaggcttctgaattctgctctagctgaagctgccaacagaagaaatgttacctatatggacatccaggctgctgctctgggacac |
317 |
Q |
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| T |
35632590 |
gcagggagttgcaaaaaggcttctgaattctgctctagctgaagctgccaacagaagaaatgttacctatatggacatccaggctgctgctctgggacac |
35632491 |
T |
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| Q |
318 |
gacaatgtgagcaggaggtcttttcatgatgat |
350 |
Q |
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| T |
35632490 |
gacaatatgagcaggaggtcttttcatgatgat |
35632458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 35629637 - 35629549
Alignment:
| Q |
17 |
acaagcagctgaaattgttcaaaagaatccaagaaatgta--tgtatatatccatatctatgacttgttcttttcttggtttttccttt |
103 |
Q |
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| T |
35629637 |
acaagcagttgaaattgttcaaaacaatccaagaaatgtaagtatatatatcgatttctatgactttttcttttcttggtttttccttt |
35629549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 35636053 - 35635967
Alignment:
| Q |
17 |
acaagcagctgaaattgttcaaaagaatccaagaaatgtatgtatatatccatatctatgacttgttcttttcttggtttttccttt |
103 |
Q |
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|||||||| ||||||||||||||| ||| |||||||| ||||| |||||| || |||||||||| |||||||||| |||||||||| |
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| T |
35636053 |
acaagcagttgaaattgttcaaaacaattcaagaaatatatgtgtatatcgatttctatgactttttcttttctttatttttccttt |
35635967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 212 - 350
Target Start/End: Original strand, 10319853 - 10319991
Alignment:
| Q |
212 |
gattttgcagggagttgcgaaaaggcttctgaattctgctctagctgaagctgccaacagaagaaatgttacctatatggacatccaggctgctgctctg |
311 |
Q |
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||||||||||||| |||||||||||||||||| | | |||||||| | |||||| || ||||| || |||||||||| | | || ||||| |||||| | |
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| T |
10319853 |
gattttgcagggaattgcgaaaaggcttctgagtaccgctctagcggtagctgctaaaagaaggaaggttacctataggaagattcaggccgctgctacg |
10319952 |
T |
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| Q |
312 |
ggacacgacaatgtgagcaggaggtcttttcatgatgat |
350 |
Q |
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| T |
10319953 |
ggacgcaacaatgtgagccggaggtcttttcatgatgat |
10319991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 212 - 350
Target Start/End: Original strand, 10336969 - 10337107
Alignment:
| Q |
212 |
gattttgcagggagttgcgaaaaggcttctgaattctgctctagctgaagctgccaacagaagaaatgttacctatatggacatccaggctgctgctctg |
311 |
Q |
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||||||||||||| |||||||||||||||||| | | |||||||| | |||||| || ||||| || |||||||||| | | || ||||| |||||| | |
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| T |
10336969 |
gattttgcagggaattgcgaaaaggcttctgagtaccgctctagcggtagctgctaaaagaaggaaggttacctataggaagattcaggccgctgctacg |
10337068 |
T |
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| Q |
312 |
ggacacgacaatgtgagcaggaggtcttttcatgatgat |
350 |
Q |
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|||| | ||||||||||| |||||||||||||||||||| |
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| T |
10337069 |
ggacgcaacaatgtgagccggaggtcttttcatgatgat |
10337107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 350
Target Start/End: Original strand, 10299421 - 10299559
Alignment:
| Q |
212 |
gattttgcagggagttgcgaaaaggcttctgaattctgctctagctgaagctgccaacagaagaaatgttacctatatggacatccaggctgctgctctg |
311 |
Q |
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||||||||||||| |||| ||||||||||||| | | |||||||| | |||||| || ||||| || |||||||||| | | || ||||| |||||| | |
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| T |
10299421 |
gattttgcagggaattgcaaaaaggcttctgagtaccgctctagcggtagctgctaaaagaaggaaggttacctataggaagattcaggccgctgctacg |
10299520 |
T |
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| Q |
312 |
ggacacgacaatgtgagcaggaggtcttttcatgatgat |
350 |
Q |
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| T |
10299521 |
ggacgcaacaatgtgagccggaggtcttttcatgatgat |
10299559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 10299210 - 10299340
Alignment:
| Q |
19 |
aagcagctgaaattgttcaaaagaatccaagaaatgtatgtatatatccatatctatgacttgttcttttcttggtttttccttttgtattgtgaaaaaa |
118 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||| ||||||| || |||| ||| ||| |
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| T |
10299210 |
aagctgctgaaattgttcaaaagaatcctagaaatgtatgtat------atatctataacttgttcttttcttgatttttccattcacattgagaagaaa |
10299303 |
T |
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| Q |
119 |
cac--aggcttgtttagtcttaagaaaatgaaaataa |
153 |
Q |
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||| || ||| ||||| ||| ||||||||||||||| |
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| T |
10299304 |
cacgaagacttatttagcctttagaaaatgaaaataa |
10299340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 10319642 - 10319772
Alignment:
| Q |
19 |
aagcagctgaaattgttcaaaagaatccaagaaatgtatgtatatatccatatctatgacttgttcttttcttggtttttccttttgtattgtgaaaaaa |
118 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||| ||||||| || |||| ||| ||| |
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| T |
10319642 |
aagctgctgaaattgttcaaaagaatcctagaaatgtatgtat------atatctataacttgttcttttcttgatttttccattcacattgagaagaaa |
10319735 |
T |
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| Q |
119 |
cac--aggcttgtttagtcttaagaaaatgaaaataa |
153 |
Q |
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| T |
10319736 |
cacgaagacttatttagcctttagaaaatgaaaataa |
10319772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 10338511 - 10338560
Alignment:
| Q |
20 |
agcagctgaaattgttcaaaagaatccaagaaatgtatgtatatatccat |
69 |
Q |
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| T |
10338511 |
agcagttgaaattgttcaaaagaatccaagaaatgtatgtatatatccat |
10338560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 10336758 - 10336888
Alignment:
| Q |
19 |
aagcagctgaaattgttcaaaagaatccaagaaatgtatgtatatatccatatctatgacttgttcttttcttggtttttccttttgtattgtgaaaaaa |
118 |
Q |
| |
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|||| ||||||||||||| ||||||||| |||||||||||||| |||||||| |||||||||||||||| ||||||| || |||| ||| ||| |
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| T |
10336758 |
aagctgctgaaattgttcgaaagaatcctagaaatgtatgtat------atatctataacttgttcttttcttgatttttccattcacattgagaagaaa |
10336851 |
T |
|
| Q |
119 |
cac--aggcttgtttagtcttaagaaaatgaaaataa |
153 |
Q |
| |
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||| || ||| ||||| ||| ||||||||||||||| |
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| T |
10336852 |
cacgaagacttatttagcctttagaaaatgaaaataa |
10336888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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