View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_low_28 (Length: 350)
Name: NF19857_low_28
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 331
Target Start/End: Complemental strand, 14598212 - 14597894
Alignment:
| Q |
15 |
atgaagatgatgaagcatttgaaggagactggggctgaccctttggagcctgttaaagtattaaaggccacttggatggctgatggcacccattggcccg |
114 |
Q |
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| T |
14598212 |
atgaagatgatgaagcatttgaaggagactggggctgaccctttggagcctgttaaagtattgaaggccacttggatggctgatggcacccattggcccg |
14598113 |
T |
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| Q |
115 |
gcacttggggttcttcttctagggaacatgctaaaggtgaccatgccggaatacttcaggtatttactcatatat--tatacctaagaataaattcaatc |
212 |
Q |
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| T |
14598112 |
gcacttggggttcttcttctagcgaacatgctaaaggtgaccatgccggaatacttcaggtatttactcatatattatatatctaagaataaattcaatc |
14598013 |
T |
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| Q |
213 |
ctgaactttaacttatgtttcacatatatatcataatttaaatgcatgcatgtatataaataggttatgttgaagccgcccagtcccgatccattaatgg |
312 |
Q |
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| T |
14598012 |
ctgaactttaacttatgtttcacatatatttcataatttaaatgcatgcatgtatataaataggtgatgttgaagccgcccagccctgatccgttaatgg |
14597913 |
T |
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| Q |
313 |
gaagtgcagacgacaagat |
331 |
Q |
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| T |
14597912 |
gaagtgaagacgacaagat |
14597894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 14610264 - 14610456
Alignment:
| Q |
15 |
atgaagatgatgaagcatttgaaggagactggggctgaccctttggagcctgttaaagtattaaaggccacttggatggctgatggcacccattggcccg |
114 |
Q |
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||||||| ||||||||| || ||||||| ||||||||| |||| ||||| | || ||| ||||||| || |||||||||||||||||||||||||| | |
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| T |
14610264 |
atgaagaagatgaagcaattcaaggagagtggggctgatccttctaagcctatcaaggtaataaaggctacctggatggctgatggcacccattggcctg |
14610363 |
T |
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| Q |
115 |
gcacttggggttcttcttctagggaacatgctaaaggtgaccatgccggaatacttcaggtatttactcatatattatacctaagaataaatt |
207 |
Q |
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| T |
14610364 |
gtacgtgggcttcttcttctagcgaacatgctaaaggtgaccattctggaatacttcaggtattttcttgtgtattatatctaagaataaatt |
14610456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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