View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_low_32 (Length: 319)
Name: NF19857_low_32
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 17027283 - 17027594
Alignment:
| Q |
1 |
gtctctcctagttcaattgacaagaatatagtatctaggttgaaagagatagttcaaaaacttgaatcgcttgtgagcctgaaagatgtacttcttctga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17027283 |
gtctctcctagttcaattgacaagaatatagtatctaggttgaaagagatagttcaaaaacttgaatcgcttgtgagcctgaaagatgtacttcttctga |
17027382 |
T |
|
| Q |
101 |
atgttaatcatggttttaatgctgggtcaccaatgttgatttcaccaagttttccttctatgaattctcatatgtatgggagaaataatgaccaaacgac |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| || |
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| T |
17027383 |
atgttaatcatggttttaatnctgggtcacggatgttgatatcaccaagttttccttctatgaattctcctatgtatgggagaaatgatgaccaaacaac |
17027482 |
T |
|
| Q |
201 |
actctctaattggctaaaatcgcgggataagaatctctctgttatttcactggtaggtatgggtgggatagggaagaccacccttgcccaacatttatgc |
300 |
Q |
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|||||||||||||| |||| || ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
17027483 |
tctctctaattggctcaaatngcaggataagaagctctccgttatttcaatggtaggtatgggtgggatagggaagaccacccttgcccaacatttgtac |
17027582 |
T |
|
| Q |
301 |
attgatcctatg |
312 |
Q |
| |
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| |||||||||| |
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| T |
17027583 |
aatgatcctatg |
17027594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 16975411 - 16975706
Alignment:
| Q |
1 |
gtctctcctagttcaattgacaagaatatagtatctaggttgaaagagatagttcaaaaacttgaatcgcttgtgagcctgaaagatgtacttcttctga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16975411 |
gtctctcctagttcaattgacaagaatatagtatctaggttgaaagagatagttcaaaaacttgaatcgcttgtgagcctgaaagatgtacttcttctga |
16975510 |
T |
|
| Q |
101 |
atgttaatcatggttttaatgctgggtcaccaatgttgatttcaccaagttttccttctatgaattctcatatgtatgggagaaataatgaccaaacgac |
200 |
Q |
| |
|
||||||||||| |||| ||||||||||||| |||||||| || ||||||||||||||||||||||||| |||||||||||||||| ||||||||| || |
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| T |
16975511 |
atgttaatcatagtttcaatgctgggtcacggatgttgatgtctccaagttttccttctatgaattctcctatgtatgggagaaatgatgaccaaaaaac |
16975610 |
T |
|
| Q |
201 |
actctctaattggctaaaatcgcgggataagaatctctctgttatttcactggtaggtatgggtgggatagggaagaccacccttgcccaacattt |
296 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16975611 |
tctctctaattggctcaaatcgcaggataagaagctctccgttatttcagtggtaggtatgggtgggatagggaagaccacccttgcccaacattt |
16975706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 17058908 - 17059206
Alignment:
| Q |
1 |
gtctctcctagttcaattgacaagaatatagtatctaggttgaaagagatagttcaaaaacttgaatcgcttgtgagcctgaaagat---gtacttcttc |
97 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||| | |||||||||| ||||||||||||||| ||||||||||| | ||||||| |
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| T |
17058908 |
gtctctcctacttcaattgacaagaatgtagtatctaggttgaaagtggtagttcaaaagcttgaatcgcttgtgggcctgaaagattcacttcttcttc |
17059007 |
T |
|
| Q |
98 |
tgaatgttaatcatggttttaatgctgggtcaccaatgttgatttcaccaagttttccttctatgaattctcatatgtatgggagaaataatgaccaaac |
197 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||| |||||| |||||||||||||| | |||||||||| ||||||||||||||||||||| |
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| T |
17059008 |
tgaatgttaatactggttttaatgctgggtcacggatgttgaagtcaccatgttttccttctatggagtctcatatgtttgggagaaataatgaccaaac |
17059107 |
T |
|
| Q |
198 |
gacactctctaattggctaaaatcgcgggataagaatctctctgttatttcactggtaggtatgggtgggatagggaagaccacccttgcccaacattt |
296 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17059108 |
aacactctctaattggctcaaatcgcaggataagaagctctccgttatttcaatggtaggtatgggtgggatagggaagaccacccttgcccaacattt |
17059206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 17086891 - 17087189
Alignment:
| Q |
1 |
gtctctcctagttcaattgacaagaatatagtatctaggttgaaagagatagttcaaaaacttgaatcgcttgtgagcctgaaagat---gtacttcttc |
97 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||| | |||||||||| ||||||||||||||| ||||||||||| | ||||||| |
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| T |
17086891 |
gtctctcctacttcaattgacaagaatgtagtatctaggttgaaagtggtagttcaaaagcttgaatcgcttgtgggcctgaaagattcacttcttcttc |
17086990 |
T |
|
| Q |
98 |
tgaatgttaatcatggttttaatgctgggtcaccaatgttgatttcaccaagttttccttctatgaattctcatatgtatgggagaaataatgaccaaac |
197 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||| |||||| |||||||||||||| | |||||||||| ||||||||||||||||||||| |
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| T |
17086991 |
tgaatgttaatactggttttaatgctgggtcacggatgttgaagtcaccatgttttccttctatggagtctcatatgtttgggagaaataatgaccaaac |
17087090 |
T |
|
| Q |
198 |
gacactctctaattggctaaaatcgcgggataagaatctctctgttatttcactggtaggtatgggtgggatagggaagaccacccttgcccaacattt |
296 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17087091 |
aacactctctaattggctcaaatcgcaggataagaagctctccgttatttcaatggtaggtatgggtgggatagggaagaccacccttgcccaacattt |
17087189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 17093464 - 17093676
Alignment:
| Q |
1 |
gtctctcctagttcaattgacaagaatatagtatctaggttgaaagagatagttcaaaaacttgaatcgcttgtgagcctgaaagatgtacttcttctga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17093464 |
gtctctcctagttcaattgacaagaatatagtatctaggttgaaagagatagttcaaaaacttgaatcgcttgtgagcctgaaagatgtacttcttctga |
17093563 |
T |
|
| Q |
101 |
atgttaatcatggttttaatgctgggtcaccaatgttgatttcaccaagttttccttctatgaattctcatatgtatgggagaaataatgaccaaacgac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| |||||||||||||||| |||||||||| || |
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|
| T |
17093564 |
atgttaatcatggttttaatgctgggtcacggatgttgatatcaccaagttttccatctatgaattctcctatgtatgggagaaatgatgaccaaacaac |
17093663 |
T |
|
| Q |
201 |
actctctaattgg |
213 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17093664 |
tctctctaattgg |
17093676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 136 - 312
Target Start/End: Original strand, 17045756 - 17045932
Alignment:
| Q |
136 |
ttgatttcaccaagttttccttctatgaattctcatatgtatgggagaaataatgaccaaacgacactctctaattggctaaaatcgcgggataagaatc |
235 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| || |||||||||||||| ||||||| ||||||||| | |
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| T |
17045756 |
ttgatatcaccaagttttccttctatgaattctcctatgtatgggagaaatgatgaccaaacaactctctctaattggctcaaatcgcaggataagaagc |
17045855 |
T |
|
| Q |
236 |
tctctgttatttcactggtaggtatgggtgggatagggaagaccacccttgcccaacatttatgcattgatcctatg |
312 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| |
|
|
| T |
17045856 |
tctccgttatttcaatggtaggtatgggtgggatagggaagaccacccttgcccaacatttgtacaatgatcctatg |
17045932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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