View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19857_low_33 (Length: 314)
Name: NF19857_low_33
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_low_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 40 - 296
Target Start/End: Complemental strand, 40455548 - 40455293
Alignment:
| Q |
40 |
aaattaaggacgctataaaaagtttttgaaatgtcatatcatcgtaatgttattctttcaatttttaaataatctcaaatatataacaaaatattaactt |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40455548 |
aaattaaggacgctataaaaagtttttgaaatgtcatatcatcgtaatgttattctttcaatttttaaataatctcaaatatataacaaaatattaactt |
40455449 |
T |
|
| Q |
140 |
aatcatccaaaactttggatctaagcaagcatacccttaattttgtttgttgtctctcaaatgaggaattgaagtcc---taaatccaaagaggaggatg |
236 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40455448 |
aatcatccaaaactttcgatctaagcaagcatacccttaattt----tgttgtctctcaaatgaggaattgaagtcctaataaatccaaagaggaggatg |
40455353 |
T |
|
| Q |
237 |
ttgtgctttcagtcatacacacaaggactgtactgacctctaatcggtctctatccgtac |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40455352 |
ttgtgctttcagtcatacacacaaggactgtactgacctctaatcggtctctatccgtac |
40455293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University