View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19857_low_38 (Length: 286)

Name: NF19857_low_38
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19857_low_38
NF19857_low_38
[»] chr1 (3 HSPs)
chr1 (12-286)||(1670213-1670487)
chr1 (39-286)||(6815268-6815520)
chr1 (247-286)||(28700016-28700055)
[»] chr4 (2 HSPs)
chr4 (39-285)||(53648747-53648992)
chr4 (250-286)||(42860658-42860694)
[»] chr8 (2 HSPs)
chr8 (247-286)||(9404162-9404201)
chr8 (247-286)||(9406323-9406362)
[»] chr3 (1 HSPs)
chr3 (247-286)||(10669949-10669988)
[»] chr2 (3 HSPs)
chr2 (254-285)||(9034769-9034800)
chr2 (255-286)||(11873288-11873319)
chr2 (258-286)||(11875770-11875798)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 12 - 286
Target Start/End: Complemental strand, 1670487 - 1670213
Alignment:
Q  12 aatagaaaggaaagatagagnnnnnnncattcgtaaataactgcaatggtaaagagatggtggagatctgcaatgaagaaaaatggatatatgaagaaga 111  Q
    ||||||||||||| ||||||       |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  1670487 aatagaaaggaaacatagaggaaaaaacattcgtaaataactgcaatggcaaagagatggtggagatctgcaatgaagaaagatggatgtatgaagaaga 1670388  T
Q  112 ggaaagacaataggaaag-tgacggtaaaataaaaagtattgggtgttgttggtgtataataagaatcatatgattttacaatttaatggttaaaattta 210  Q
    ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1670387 ggaaagagaataggaaaaatgacggtaaaataaaaagtattgggtgttgttggtgtataataagaatcatatgattttacaatttaatggttaaaatttg 1670288  T
Q  211 tttcattatttataccnnnnnnnnntatttgttttgttcactcactcacggtaggagacctatcaaggtctcccac 286  Q
    ||| ||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1670287 ttttattatttatacc-aaaaaaaatatttgttttgttcactcactcacggtaggagacctatcaaggtctcccac 1670213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 39 - 286
Target Start/End: Complemental strand, 6815520 - 6815268
Alignment:
Q  39 cattcgtaaataactgcaatggtaaagagatggtggagatctgcaatgaagaaaaatggatatatgaagaagaggaaagacaataggaaa-gtgacggta 137  Q
    |||||||||||||||||||||| |||||||||||||| |||| ||||||||||| |||||| |||||||||||||||||| ||||||||| ||||| |||    
T  6815520 cattcgtaaataactgcaatggcaaagagatggtggatatctacaatgaagaaagatggatgtatgaagaagaggaaagagaataggaaaagtgacagta 6815421  T
Q  138 aaataaaaagtattgggtgttgttggtgtataataagaatcatatgattttacaatttaatggttaaaatttatttcattatttatac----cnnnnnnn 233  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||||                
T  6815420 aaataaaaagtattgggagttattggtgtataataagaatcatataactttacaatctaatggttaaaatttgtttcattatttatacaaaaaaaaaaaa 6815321  T
Q  234 nntatttgttttgttcactcactcacggtaggagacctatcaaggtctcccac 286  Q
       |  |||||||||| ||||||||||||||||||||||||||||||||||||    
T  6815320 aaaaaatgttttgttcgctcactcacggtaggagacctatcaaggtctcccac 6815268  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 286
Target Start/End: Original strand, 28700016 - 28700055
Alignment:
Q  247 ttcactcactcacggtaggagacctatcaaggtctcccac 286  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  28700016 ttcactcactcacggtaggagacctattaaggtctcccac 28700055  T

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Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 39 - 285
Target Start/End: Original strand, 53648747 - 53648992
Alignment:
Q  39 cattcgtaaataactgcaatggtaaagagatggtggagatctgcaatgaagaaaaatggatatatgaagaagaggaaagacaataggaaa-gtgacggta 137  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||| || |||||||||||||||||||||||| ||| |||||||||    
T  53648747 cattcgtaaataactgcaatggcaaagagatggtggggatctgcaatgaagaaagatgaatgtatgaagaagaggaaagacaatagaaaaagtgacggta 53648846  T
Q  138 aaataaaaagtattgggtgttgttggtgtataataagaatcatatgattttacaatttaatggttaaaatttatttcattatttataccnnnnnnnnnta 237  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         ||    
T  53648847 aaataaaaagtattggatgttattggtgtataataagaatcatatgattttacaatttaatggttaaaatttgtttcattatttataccaaaaaaaaata 53648946  T
Q  238 tttgttttgttcactcactcacggtaggagacctatcaaggtctccca 285  Q
     ||||||||||||| |||||||||||||| ||||||||||||||||||    
T  53648947 -ttgttttgttcacccactcacggtagga-acctatcaaggtctccca 53648992  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 42860658 - 42860694
Alignment:
Q  250 actcactcacggtaggagacctatcaaggtctcccac 286  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  42860658 actcactcacggtaggaaacctattaaggtctcccac 42860694  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 286
Target Start/End: Complemental strand, 9404201 - 9404162
Alignment:
Q  247 ttcactcactcacggtaggagacctatcaaggtctcccac 286  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  9404201 ttcactcactcacggtaggagacctattaaggtctcccac 9404162  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 286
Target Start/End: Complemental strand, 9406362 - 9406323
Alignment:
Q  247 ttcactcactcacggtaggagacctatcaaggtctcccac 286  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  9406362 ttcactcactcacggtaggagacctattaaggtctcccac 9406323  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 247 - 286
Target Start/End: Complemental strand, 10669988 - 10669949
Alignment:
Q  247 ttcactcactcacggtaggagacctatcaaggtctcccac 286  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  10669988 ttcactcactcacggtaggagacctattaaagtctcccac 10669949  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 254 - 285
Target Start/End: Original strand, 9034769 - 9034800
Alignment:
Q  254 actcacggtaggagacctatcaaggtctccca 285  Q
    ||||||||||||||||||||||||||||||||    
T  9034769 actcacggtaggagacctatcaaggtctccca 9034800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 255 - 286
Target Start/End: Complemental strand, 11873319 - 11873288
Alignment:
Q  255 ctcacggtaggagacctatcaaggtctcccac 286  Q
    ||||||||||||||||||||||||||||||||    
T  11873319 ctcacggtaggagacctatcaaggtctcccac 11873288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 286
Target Start/End: Original strand, 11875770 - 11875798
Alignment:
Q  258 acggtaggagacctatcaaggtctcccac 286  Q
    |||||||||||||||||||||||||||||    
T  11875770 acggtaggagacctatcaaggtctcccac 11875798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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