View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_low_39 (Length: 281)
Name: NF19857_low_39
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_low_39 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 28 - 281
Target Start/End: Complemental strand, 38285397 - 38285144
Alignment:
| Q |
28 |
atttaaatttatttataattgacaacgaaggagtgtattagtcaaataacacaagagctcaaaggacactccaagtctggagaaggtagaccaattccat |
127 |
Q |
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| T |
38285397 |
atttaaatttgtttataattgacaacgaaggagtgtattagtcaaataacacaagagctcaaaggacactccaagtctggagaaggtagaccaattccat |
38285298 |
T |
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| Q |
128 |
tagacagcttcgataaattgacaattaagattccaatcccgaagcaactaattcaagtctgaaaaattcagtccaatactagctgctgtgagtaaaatct |
227 |
Q |
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| T |
38285297 |
tagacagcttcgataaattgacaattaagattccaatcccgaagcaactaattcaagtctgaaaaattcagtccaatactagctgctgtgagtaaaatct |
38285198 |
T |
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| Q |
228 |
ttgacaacctatagcaatcttgtgcattaagatcacagatagtagtaaacactt |
281 |
Q |
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| T |
38285197 |
ttgacaacctatagcaatcttgtgcattaagatcacagatagtagtaaacactt |
38285144 |
T |
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