View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19857_low_49 (Length: 242)

Name: NF19857_low_49
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19857_low_49
NF19857_low_49
[»] chr2 (7 HSPs)
chr2 (18-242)||(16975057-16975281)
chr2 (20-242)||(17026935-17027153)
chr2 (20-242)||(17093116-17093334)
chr2 (156-242)||(17058689-17058775)
chr2 (156-242)||(17086672-17086758)
chr2 (51-100)||(17058607-17058656)
chr2 (51-100)||(17086590-17086639)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 16975057 - 16975281
Alignment:
Q  18 gttgattcctctttcttgctatggcaggcactcgaaactcttggtggtgctattgcatcttctttctttgaggctttgattgacaaattgtcttctgctg 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16975057 gttgattcctcttttttgctatggcaggcactcgaaactcttggtggtgctattgcatcttctttctttgaggctttgattgacaaattgtcttctgctg 16975156  T
Q  118 aaactatcgacgagaatctacacagtaggttgataacagctttgttttccatcaatgttgttgctgatgatgctgagaaaaagcagatcaataactttca 217  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16975157 aaactatcgacgagaatctacatagtaggttgataacggctttgttttccatcaatgctgttgctgatgatgctgagaaaaagcagatcaataactttca 16975256  T
Q  218 tgtgaaagaatggcttcttggggtt 242  Q
    |||||||||||||||||||||||||    
T  16975257 tgtgaaagaatggcttcttggggtt 16975281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 17026935 - 17027153
Alignment:
Q  20 tgattcctctttcttgctatggcaggcactcgaaactcttggtggtgctattgcatcttctttctttgaggctttgattgacaaattgtcttctgctgaa 119  Q
    |||||||||||| ||||||||| |    |||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17026935 tgattcctcttttttgctatggaa----ctcgaaactcctggtggcgctattgcatcttctttctttgaggcattgattgacaaattgtcttctgctgaa 17027030  T
Q  120 actatcgacgagaatctacacagtaggttgataacagctttgttttccatcaatgttgttgctgatgatgctgagaaaaagcagatcaataactttcatg 219  Q
    ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17027031 actatngacgagaatctacatagtaggttgataacggctttgttttccatcaatgttgttgctgatgatgctgagaaaaagcagatcnataactttcatg 17027130  T
Q  220 tgaaagaatggcttcttggggtt 242  Q
    |||||||||||||||||||||||    
T  17027131 tgaaagaatggcttcttggggtt 17027153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 17093116 - 17093334
Alignment:
Q  20 tgattcctctttcttgctatggcaggcactcgaaactcttggtggtgctattgcatcttctttctttgaggctttgattgacaaattgtcttctgctgaa 119  Q
    |||||||||||| ||||||||| |    |||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17093116 tgattcctcttttttgctatggaa----ctcgaaactcctggtggcgctattgcatcttctttctttgaggcattgattgacaaattgtcttctgctgaa 17093211  T
Q  120 actatcgacgagaatctacacagtaggttgataacagctttgttttccatcaatgttgttgctgatgatgctgagaaaaagcagatcaataactttcatg 219  Q
    ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17093212 actatggacgagaatctacatagtaggttgataacggctttgttttccatcaatgttgttgctgatgatgctgagaaaaagcagatcgataactttcatg 17093311  T
Q  220 tgaaagaatggcttcttggggtt 242  Q
    |||||||||||||||||||||||    
T  17093312 tgaaagaatggcttcttggggtt 17093334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 17058689 - 17058775
Alignment:
Q  156 gctttgttttccatcaatgttgttgctgatgatgctgagaaaaagcagatcaataactttcatgtgaaagaatggcttcttggggtt 242  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||| |||||| ||||| |||||||||||||||    
T  17058689 gctttgttttccatcaatgttgttgctgatgatgctgaccaaaagcaggtcaataactctcatgtaaaagactggcttcttggggtt 17058775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 17086672 - 17086758
Alignment:
Q  156 gctttgttttccatcaatgttgttgctgatgatgctgagaaaaagcagatcaataactttcatgtgaaagaatggcttcttggggtt 242  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||| |||||| ||||| |||||||||||||||    
T  17086672 gctttgttttccatcaatgttgttgctgatgatgctgaccaaaagcaggtcaataactctcatgtaaaagactggcttcttggggtt 17086758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 17058607 - 17058656
Alignment:
Q  51 gaaactcttggtggtgctattgcatcttctttctttgaggctttgattga 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  17058607 gaaactattggtggtgctattgcatcttctttctttgaggctttgcttga 17058656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 17086590 - 17086639
Alignment:
Q  51 gaaactcttggtggtgctattgcatcttctttctttgaggctttgattga 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  17086590 gaaactattggtggtgctattgcatcttctttctttgaggctttgcttga 17086639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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