View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19857_low_5 (Length: 634)

Name: NF19857_low_5
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19857_low_5
NF19857_low_5
[»] chr5 (3 HSPs)
chr5 (8-274)||(14176643-14176909)
chr5 (481-544)||(9071595-9071659)
chr5 (483-544)||(28222988-28223050)
[»] chr7 (3 HSPs)
chr7 (535-619)||(17353296-17353380)
chr7 (457-527)||(17353243-17353313)
chr7 (481-544)||(40320768-40320832)
[»] chr6 (3 HSPs)
chr6 (545-619)||(20583408-20583482)
chr6 (483-606)||(6627375-6627502)
chr6 (457-492)||(20583370-20583405)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 14176909 - 14176643
Alignment:
Q  8 gagcagagatctccttttcgctatgatcaatttgttgagcttcaatatatcaaaaaatataaaagttttttacttatgtattggttagtcaaaataataa 107  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14176909 gagcagagatctccttttcgctgtgatcaatttgatgagcttcaatatatcaaaaaatttaaaagttttttacttatgtattggttagtcaaaataataa 14176810  T
Q  108 ctctcttttagatatgatattataataagtaaatatttattttccctcaaaaaa--gtaaatatttataggtattgaaactacaataaatgagatattga 205  Q
    ||||||||||  |||||||| |||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  14176809 ctctctttta--tatgatatgataataagtaaatatttattgtccctcaaaaaaaagtaaatatttataggtattgaaactacaataagtgagatattga 14176712  T
Q  206 acgattgatatgacaatattaacgaaccttttaatgtaaatgttcattttgattaacagaatgtataat 274  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14176711 acgactgatatgacgatattaacgaaccttttaatgcaaatgttcattttgattaacagaatgtataat 14176643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 481 - 544
Target Start/End: Complemental strand, 9071659 - 9071595
Alignment:
Q  481 tcatcaattcaagcaaaacccataaatca-atatctaacacaaaaacattttaagatatctaaca 544  Q
    ||||||||||||||||||| | ||||||| |||||||||||||||||| ||| ||||||||||||    
T  9071659 tcatcaattcaagcaaaactcgtaaatcagatatctaacacaaaaacaatttcagatatctaaca 9071595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 483 - 544
Target Start/End: Original strand, 28222988 - 28223050
Alignment:
Q  483 atcaattcaagcaaaacccataaatca-atatctaacacaaaaacattttaagatatctaaca 544  Q
    ||||||||||||||||| ||||||||| |||||||  ||||||||| ||  ||||||||||||    
T  28222988 atcaattcaagcaaaactcataaatcagatatctagtacaaaaacaattccagatatctaaca 28223050  T

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Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 535 - 619
Target Start/End: Original strand, 17353296 - 17353380
Alignment:
Q  535 atatctaacacaaaaacacccagaatcttcaatattcataaaatcatcaattccaaatatctaacacacccagaatcttcaatct 619  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17353296 atatctaactcaaaaacacccagaatcttcaatattcataaaatcatcaattccagatatctaacacacccagaatcttcaatct 17353380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 457 - 527
Target Start/End: Original strand, 17353243 - 17353313
Alignment:
Q  457 agcttacataatcattttttatcatcatcaattcaagcaaaacccataaatcaatatctaacacaaaaaca 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17353243 agcttacataatcattttttatcatcatcaattcaagcaaaacccataaatcaatatctaactcaaaaaca 17353313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 481 - 544
Target Start/End: Original strand, 40320768 - 40320832
Alignment:
Q  481 tcatcaattcaagcaaaacccataaatca-atatctaacacaaaaacattttaagatatctaaca 544  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||| ||  ||||||||||||    
T  40320768 tcatcaattcaagcaaaactcataaatcagatatctaacacaaaaacaattccagatatctaaca 40320832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 5e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 545 - 619
Target Start/End: Original strand, 20583408 - 20583482
Alignment:
Q  545 caaaaacacccagaatcttcaatattcataaaatcatcaattccaaatatctaacacacccagaatcttcaatct 619  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  20583408 caaaaacacccacaatcttcaatattcataaaatcatcaattccagatatctaacacacacagaatcttcaatct 20583482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 483 - 606
Target Start/End: Original strand, 6627375 - 6627502
Alignment:
Q  483 atcaattcaagcaaaacccataaatcaa-tatctaa----cacaaaaacattttaagatatctaacacaaaaacacccagaatcttcaatattcataaaa 577  Q
    ||||||||||||||||| |||||||||  |||||||    | |||||||| ||  |||||||||||||||||||||| |||||||||||| |||||||||    
T  6627375 atcaattcaagcaaaactcataaatcaggtatctaattaacgcaaaaacaattctagatatctaacacaaaaacacctagaatcttcaatcttcataaaa 6627474  T
Q  578 tcatcaattccaaatatctaacacaccca 606  Q
    ||||||||| |||| |||||||| |||||    
T  6627475 tcatcaatt-caaaaatctaacaaaccca 6627502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 457 - 492
Target Start/End: Original strand, 20583370 - 20583405
Alignment:
Q  457 agcttacataatcattttttatcatcatcaattcaa 492  Q
    ||||||||||||||||||||||||||||||||||||    
T  20583370 agcttacataatcattttttatcatcatcaattcaa 20583405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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