View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_low_51 (Length: 240)
Name: NF19857_low_51
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 30325442 - 30325666
Alignment:
| Q |
1 |
tacattttcttaacattcatccttctctggaattacaaaccacccattcatccaactgaacaaaaagcactctacaatgttctcaactccatcaacccag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30325442 |
tacattttcttaacattcatccttctctggaattacaaaccacccatacacccaaccgaacaaaaagcactctacaatgttctcaactccatcaacccag |
30325541 |
T |
|
| Q |
101 |
atttcccatggaccactcgcttccccggcgacctctgtcgcttcccaccacccggcattgtttgccgttactcctactttcattttcttcagtatcgcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30325542 |
atttcccatggaccactcgcttccccggcgacctctgtcgcttcccaccacccggcattgtttgccgttactcctactttcattttcttcagtatcgcaa |
30325641 |
T |
|
| Q |
201 |
atttaaatcacacattgaacaactt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
30325642 |
atttaaatcacacattgaacaactt |
30325666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 30337079 - 30337279
Alignment:
| Q |
1 |
tacattttcttaacattcatccttctctggaattacaaaccacccattcatccaactgaacaaaaagcactctacaatgttctcaactccatcaacccag |
100 |
Q |
| |
|
||||||| |||| ||| |||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30337079 |
tacatttgcttatcatccatctttctctggaattacaaaccacccatacacccaactgaacaaaaagcactctacaatgttctcaactccatcaacccag |
30337178 |
T |
|
| Q |
101 |
atttcccatggaccactcgcttccccggcgacctctgtcgcttcccaccacccggcattgtttgccgttactcctactttcattttcttcagtatcgcaa |
200 |
Q |
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||||||||||||| ||||||||| ||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
30337179 |
atttcccatggacaactcgcttctccggcgacctctgtcgcttacccccacccggcgttgtttgccgttactcctactttcatcttcttaagtatcgcaa |
30337278 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
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| |
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| T |
30337279 |
a |
30337279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 30343430 - 30343383
Alignment:
| Q |
52 |
ccaactgaacaaaaagcactctacaatgttctcaactccatcaaccca |
99 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30343430 |
ccaacagaacaaaaagcactctacaatgttctcaactccctcaaccca |
30343383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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