View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19857_low_54 (Length: 231)
Name: NF19857_low_54
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_low_54 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 46322739 - 46322933
Alignment:
| Q |
17 |
gaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctga |
116 |
Q |
| |
|
||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46322739 |
gaatagagcacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctga |
46322838 |
T |
|
| Q |
117 |
actctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctccggatctacgtggctatggtgacactgagg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46322839 |
actctggtactcttggcgccaccagattgcggctctcggctctctcggctaccgcgccgtagctccggatctacgtggctatggtgacactgagg |
46322933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 46326444 - 46326633
Alignment:
| Q |
17 |
gaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46326444 |
gaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctga |
46326543 |
T |
|
| Q |
117 |
actctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctccggatctacgtggctatggtgacac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || || ||||| ||||| ||||||||||||||||| |
|
|
| T |
46326544 |
actctggtactcttggcgccaccagattgcggctctcggatccctcggttaccgtgctgttgctcccgatctccgtggctatggtgacac |
46326633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 46524820 - 46524631
Alignment:
| Q |
17 |
gaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctga |
116 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || || |
|
|
| T |
46524820 |
gaatagaacacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgtcttgttccttcatggcttcccaga |
46524721 |
T |
|
| Q |
117 |
actctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctccggatctacgtggctatggtgacac |
206 |
Q |
| |
|
||||||||| || |||||||||||||||| |||||| |||||||||||||||| || || ||||| ||||| ||||||||||||||||| |
|
|
| T |
46524720 |
actctggtattcatggcgccaccagattgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacac |
46524631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 46494824 - 46494632
Alignment:
| Q |
17 |
gaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctga |
116 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| || ||||| |
|
|
| T |
46494824 |
gaatagagcacagaacagtggaagtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcctgttccttcacggattccctga |
46494725 |
T |
|
| Q |
117 |
actctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctccggatctacgtggctatggtgacactga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || || ||||| ||||| ||||| ||||| || ||||| |
|
|
| T |
46494724 |
actctggtactcttggcgccaccagattgcggctctcggctctctcggttaccgggctgtggctcccgatcttcgtggttatggcgatactga |
46494632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 46532373 - 46532179
Alignment:
| Q |
17 |
gaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctga |
116 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| || || |
|
|
| T |
46532373 |
gaatagaacacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccaga |
46532274 |
T |
|
| Q |
117 |
actctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctccggatctacgtggctatggtgacactgagg |
211 |
Q |
| |
|
||||||||| || ||||||||||| |||| ||||| ||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||| |||| |
|
|
| T |
46532273 |
actctggtattcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacaccgagg |
46532179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 46490525 - 46490337
Alignment:
| Q |
18 |
aatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaa |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |||||| |
|
|
| T |
46490525 |
aatagaacacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaa |
46490426 |
T |
|
| Q |
118 |
ctctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctccggatctacgtggctatggtgacac |
206 |
Q |
| |
|
|||||||| || ||||||||||||||| | ||||| ||||||||||| |||||||| || ||||| ||||| ||||| ||||| ||||| |
|
|
| T |
46490425 |
ctctggtattcatggcgccaccagatttctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacac |
46490337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 46479324 - 46479135
Alignment:
| Q |
17 |
gaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctga |
116 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
46479324 |
gaatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctga |
46479225 |
T |
|
| Q |
117 |
actctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctccggatctacgtggctatggtgacac |
206 |
Q |
| |
|
||||||||| || ||||||||||||||||| ||||| ||||||||||| ||||| || || ||||| ||||| |||||||| || ||||| |
|
|
| T |
46479224 |
actctggtattcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacac |
46479135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 46520754 - 46520565
Alignment:
| Q |
17 |
gaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctga |
116 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
46520754 |
gaatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctga |
46520655 |
T |
|
| Q |
117 |
actctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctccggatctacgtggctatggtgacac |
206 |
Q |
| |
|
||||||||| || ||||||||||||||||| ||||| ||||||||||| ||||| || || ||||| ||||| |||||||| || ||||| |
|
|
| T |
46520654 |
actctggtattcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacac |
46520565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 28 - 209
Target Start/End: Complemental strand, 46517102 - 46516921
Alignment:
| Q |
28 |
agaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactctggtact |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | || |||||||| ||||||||||| | || ||||||||||| || ||||||||| ||||||||| |
|
|
| T |
46517102 |
agaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggtact |
46517003 |
T |
|
| Q |
128 |
cttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctccggatctacgtggctatggtgacactga |
209 |
Q |
| |
|
| |||||||||||||||| |||||| ||||||| ||||||||| |||| ||||| ||||| ||||||| ||||||||||| |
|
|
| T |
46517002 |
catggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctctgtggctacggtgacactga |
46516921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 7475311 - 7475387
Alignment:
| Q |
130 |
tggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctccggatctacgtggctatggtgacac |
206 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||| | ||| ||| | ||||| ||||||||||||||||| |
|
|
| T |
7475311 |
tggcgccaccagattatagctctcagctccctcggctaccatgtcgtggctactgatctccgtggctatggtgacac |
7475387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University