View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_low_57 (Length: 227)
Name: NF19857_low_57
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_low_57 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 13653196 - 13653407
Alignment:
| Q |
1 |
tgtgattgtccagaacttggagttataggggatatgttggcatcaaacaattttagttcgggttcatcagtgctggttgtgcaacaatatgggtacggag |
100 |
Q |
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| T |
13653196 |
tgtgattgtccagaacttggagttatcggggatatgttggcatcaaacaattttagttcgggttcatcagtgttagttgtgcaacaatatgggtacggag |
13653295 |
T |
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| Q |
101 |
gaatggtttcgggaaatcaacctaaccatgtgtccactaataaagatggttttgaggaacttgtcgtatagacacaataagaataatggttggtaccttg |
200 |
Q |
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| T |
13653296 |
gaatagtttcgggaaatcaacctaatcatgtgtccactaataaagatggttttgaggaacttgtcgtatagacacaataagaataatggttggtaccttg |
13653395 |
T |
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| Q |
201 |
atttttaatgtt |
212 |
Q |
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|||||||||||| |
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| T |
13653396 |
atttttaatgtt |
13653407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 13660696 - 13660887
Alignment:
| Q |
1 |
tgtgattgtccagaacttggagttataggggatatgttggcatcaaacaattttagttcgggttcatcagtgctggttgtgcaacaatatgggtacggag |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |
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| T |
13660696 |
tgtgattgtccagaacttggagttatcggggatatgttggcatcaaacaattttagttcgggttcgtctgtgctcgttgtgcaacaatatgggtacggag |
13660795 |
T |
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| Q |
101 |
gaatggtttcgggaaatcaacctaaccatgtgtccactaataaagatggttttgaggaacttgtcgtatagacacaat-aagaataatggtt |
191 |
Q |
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| T |
13660796 |
gaatggtttcgggaaatcaacctaaccatgtgtccactaataaagatggttttgaggaacttgtcgtatagacacaatgtagaataatggtt |
13660887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 28609325 - 28609517
Alignment:
| Q |
1 |
tgtgattgtccagaacttggagttataggggatatgttggcatcaaacaattttagttcgggttcatcagtgctggttgtgcaacaatatgggtacggag |
100 |
Q |
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||||| |||||||||||||| ||| |||||||||| || ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| |||| |
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| T |
28609325 |
tgtgactgtccagaacttggggttttaggggatattttagcatcaaacaattttggttcgggctcatcagtgctagttgtgcaacaatatgggtatggag |
28609424 |
T |
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| Q |
101 |
gaatggtttcgggaaatcaacctaaccatgtgtccactaataaagatggttttgaggaacttgtcgtatagacacaataagaataatggttggt |
194 |
Q |
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| T |
28609425 |
gaatggttttgggaaagcaaccaaaccaggtgaacgacaataatgatgcttttgagg-tgttgtagtgaagaaacaataagaataatggttggt |
28609517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 437579 - 437424
Alignment:
| Q |
1 |
tgtgattgtccagaacttggagttataggggatatgttggcatcaaacaattttagttcgggttcatcagtgctggttgtgcaacaatatgggtacggag |
100 |
Q |
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|||||||||||||||||||||||| ||||||| || ||||||||| | |||||| |||| | ||||| ||||| |||||||||||||||||||| || | |
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| T |
437579 |
tgtgattgtccagaacttggagttttaggggacattttggcatcagataattttgtttcgagatcatctgtgctagttgtgcaacaatatgggtatgggg |
437480 |
T |
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| Q |
101 |
gaatggtttcgggaaatcaacctaaccatgtgtccactaataaagatggttttgag |
156 |
Q |
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||||||||| || ||| ||||| ||||||||| |||| ||||| |||||||||||| |
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| T |
437479 |
gaatggttttggaaaagcaacccaaccatgtgaccaccaataacgatggttttgag |
437424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 17597475 - 17597564
Alignment:
| Q |
3 |
tgattgtccagaacttggagttataggggatatgttggcatcaaacaattttagttcgggttcatcagtgctggttgtgcaacaatatgg |
92 |
Q |
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||||||||| |||||||| ||||| || || ||||| |||||||| | |||| |||| ||||||| | || ||||||||||||||||| |
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| T |
17597475 |
tgattgtcctgaacttggtgttattggtgacatgttagcatcaaatagttttggttcaaattcatcaatacttgttgtgcaacaatatgg |
17597564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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