View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_low_60 (Length: 220)
Name: NF19857_low_60
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 51146410 - 51146202
Alignment:
| Q |
1 |
ttttgctctgacctcttcatttcttgcagtctaataagctgactataggctccattgggatcattggtgagctcagcatgtgaaccttatcaattgaaaa |
100 |
Q |
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| T |
51146410 |
ttttgctctgacctcttcatttcttgcagtctaataagctgactataggctccattgggatcattggtgagctcagcatgtgaaccttatcaattgaaaa |
51146311 |
T |
|
| Q |
101 |
atataagaatgcaataaaatatataaacatttgggcttcatgctttttgtgaattttgaatcgtggagaaataatgtgtctacctctttcaactattttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
51146310 |
atataagaatgcaataaaatatataaacatttgggcttcatgctttttatgaattttgaatcgtggagaaataacgtgtctacctctttcaactattttt |
51146211 |
T |
|
| Q |
201 |
ccttgatga |
209 |
Q |
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||||||||| |
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| T |
51146210 |
ccttgatga |
51146202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 29936621 - 29936791
Alignment:
| Q |
1 |
ttttgctctgacctcttcatttcttgcagtctaataagctgactataggctccattgggatcattggtgagctcagcatgtgaaccttatcaattgaaaa |
100 |
Q |
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||||| ||||||| ||||||||||||||||||||| ||||| |||||||| ||||| | ||| ||||||||||| ||||||||||| | |||||||||| |
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| T |
29936621 |
ttttgttctgaccccttcatttcttgcagtctaattagctggctataggcaccattagcatccttggtgagctcgacatgtgaacctaaccaattgaaaa |
29936720 |
T |
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| Q |
101 |
atataagaatgcaataaaatatataaacatttgggcttcatgctttttgtgaattttgaatcgtggagaaa |
171 |
Q |
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| T |
29936721 |
atataagaatgctattatgtacaaaaacatttgggcttcatgatttctattaattttgagtcatggagaaa |
29936791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 51157535 - 51157404
Alignment:
| Q |
15 |
cttcatttcttgcagtctaataagctgactataggctccattgggatcattggtgagctcagcatgtgaaccttatcaattgaaaaatataagaatgcaa |
114 |
Q |
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|||||||||||||||||||||||| || |||||||||||||| |||| || |||||||| |||||||||||| | ||||| |||||||||||||||| | |
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| T |
51157535 |
cttcatttcttgcagtctaataagttggctataggctccattaggatactttgtgagctcggcatgtgaacctaaccaattaaaaaatataagaatgcta |
51157436 |
T |
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| Q |
115 |
taaaatatataaacatttgggcttcatgcttt |
146 |
Q |
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| T |
51157435 |
ctaagtatattaacatttgtgcatcatgcttt |
51157404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 51200328 - 51200221
Alignment:
| Q |
7 |
tctgacctcttcatttcttgcagtctaataagctgactataggctccattgggatcattggtgagctcagcatgtgaaccttatcaattgaaaaatataa |
106 |
Q |
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||||||| | ||||||||||||| ||||||||||| ||||||||||||| ||||| | ||||||| ||||||||||||| |||||||| ||||||||| |
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| T |
51200328 |
tctgaccccctcatttcttgcagcctaataagctgcctataggctccatcaggatcccttgtgagctgagcatgtgaacctgatcaattg-aaaatataa |
51200230 |
T |
|
| Q |
107 |
gaatgcaat |
115 |
Q |
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||||||||| |
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| T |
51200229 |
gaatgcaat |
51200221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 29936808 - 29936845
Alignment:
| Q |
169 |
aaataatgtgtctacctctttcaactatttttccttga |
206 |
Q |
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| T |
29936808 |
aaataatgtttctacctcgttcaactatttttccttga |
29936845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 51157364 - 51157324
Alignment:
| Q |
169 |
aaataatgtgtctacctctttcaactatttttccttgatga |
209 |
Q |
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||||||| ||| |||||||||||||||||||||| |||||| |
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| T |
51157364 |
aaataatctgtgtacctctttcaactatttttccatgatga |
51157324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 51213500 - 51213432
Alignment:
| Q |
19 |
atttcttgcagtctaataagctgactataggctccattgggatcattggtgagctcagcatgtgaacct |
87 |
Q |
| |
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|||||||||| |||||| || |||||||| ||||||| |||| || |||||||||||||||| |||| |
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| T |
51213500 |
atttcttgcaatctaatgagttgactataagctccatcaggatttttagtgagctcagcatgtgtacct |
51213432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 49736538 - 49736606
Alignment:
| Q |
19 |
atttcttgcagtctaataagctgactataggctccattgggatcattggtgagctcagcatgtgaacct |
87 |
Q |
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||||||||||| ||||| ||||||||||| ||||||| |||||||||||||||||| |||||| |||| |
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| T |
49736538 |
atttcttgcagcctaatgagctgactataagctccatcaggatcattggtgagctcatcatgtgtacct |
49736606 |
T |
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