View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19857_low_62 (Length: 209)
Name: NF19857_low_62
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19857_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 4439321 - 4439145
Alignment:
| Q |
18 |
gatggcaaaaaggtgaagaagtttggatactatactcctcctttgttttggtaggagagaaacgttttctttgttttggtaggagaaaaacgttttcttt |
117 |
Q |
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| T |
4439321 |
gatggcagaaaggtgaagaagtttggatactatactcctcctttgttttggtaggagagaaacgctttctgtgttttggtaggagagaaacgctttcttt |
4439222 |
T |
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| Q |
118 |
gctgattctatactcctctatcaatatatacacaccactataagataataataattctttcaaatctttctcacaat |
194 |
Q |
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| T |
4439221 |
gttgattctatactcctctatcaatatatacacaccactataagataataataattctttcaaatctttctcacaat |
4439145 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 8397860 - 8397888
Alignment:
| Q |
165 |
ataataattctttcaaatctttctcacaa |
193 |
Q |
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| T |
8397860 |
ataataattctttcaaatctttctcacaa |
8397888 |
T |
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