View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19857_low_7 (Length: 540)

Name: NF19857_low_7
Description: NF19857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19857_low_7
NF19857_low_7
[»] chr8 (14 HSPs)
chr8 (19-531)||(16792895-16793409)
chr8 (371-532)||(16790982-16791143)
chr8 (412-531)||(16617261-16617380)
chr8 (25-279)||(16617459-16617719)
chr8 (377-501)||(16629615-16629739)
chr8 (377-501)||(16638496-16638620)
chr8 (25-270)||(16638673-16638927)
chr8 (405-499)||(16629309-16629403)
chr8 (405-499)||(16638190-16638284)
chr8 (25-270)||(16629792-16630047)
chr8 (486-530)||(15110407-15110451)
chr8 (460-531)||(16628968-16629039)
chr8 (460-531)||(16637849-16637920)
chr8 (28-98)||(15110262-15110332)
[»] chr4 (1 HSPs)
chr4 (43-528)||(38877741-38878232)


Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 19 - 531
Target Start/End: Complemental strand, 16793409 - 16792895
Alignment:
Q  19 gtagatacacaccaacactcaaaggatttctcccttgattaaagaaaccaataatcaaaatcaggattctcggaaacctaatcttggtt--aaagagcaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||  |||||||||    
T  16793409 gtagatacacaccaacactcaaaggatttctcccttgattaaagaaaccaataatcaaaatcaagattctcggaaacctactcttggttttaaagagcaa 16793310  T
Q  117 agttctgcagtacagcgaccgattaaagtggttggcctctaaaacttgtgcctttatttgttttctcattaactcgtaaaagttgagtgttgatacgtag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16793309 agttctgcagtacagcgaccgattaaagtggttggcctctaaaacttgtgcctttatttgttttctcattaactcgtaaaagttgagtgttgatacgtag 16793210  T
Q  217 taaattctttgaattttatattatttttagatggcatctatttcgcctaaagcatttagtgcaacacttgatgaaatttaagacgttgtccattttaaga 316  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16793209 taaattctttgaatttgatattatttttagatggcatctatttcgcctaaagcatttagtgcaacacttgatgaaatttaagacattgtccattttaaga 16793110  T
Q  317 atgaaataccagaggaaaaattgttatataaactgcctgagatggttcgtgaagtaggattaccgacctttattgttctcgaaggcgaagtcttgccact 416  Q
    ||||||||||||||||||||||||||||| || |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16793109 atgaaataccagaggaaaaattgttatatcaaatgccagagattgttcgtgaagtaggattaccgacctttattgttctcgaaggcgaagtcttgccact 16793010  T
Q  417 caagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgacttgcaattatttgttcccacaggatggaaaaagcctcgcagctttt 516  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16793009 aaagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgacttgcaattatttgttcccacaggatggaaaaagcctcgcagctttt 16792910  T
Q  517 ttgcaaccacctttg 531  Q
    |||||||||| ||||    
T  16792909 ttgcaaccacttttg 16792895  T

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Target: chr8; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 371 - 532
Target Start/End: Complemental strand, 16791143 - 16790982
Alignment:
Q  371 taggattaccgacctttattgttctcgaaggcgaagtcttgccactcaagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgac 470  Q
    ||||| ||| ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| | ||||||||||| ||||||||||||||  ||||    
T  16791143 taggactactgacctttattgttcttgaaggtgaagtcttgccactaaagtatttaaattacatttattattgatgcattttcatgagcaagatagtgac 16791044  T
Q  471 ttgcaattatttgttcccacaggatggaaaaagcctcgcagcttttttgcaaccacctttgc 532  Q
    ||||||||||||||| ||||||||| ||||| ||||||||||||| ||||||||||||||||    
T  16791043 ttgcaattatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttgc 16790982  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 412 - 531
Target Start/End: Complemental strand, 16617380 - 16617261
Alignment:
Q  412 ccactcaagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgacttgcaattatttgttcccacaggatggaaaaagcctcgcag 511  Q
    ||||| |||| ||| |||||||||  ||||||||| || ||||| ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||    
T  16617380 ccactgaagtgtttcaattacatttgatattgatgtattttcatcagcaagattatgacttgcaatgatttgttcccacaggatggaaaatgcctcgcag 16617281  T
Q  512 cttttttgcaaccacctttg 531  Q
    |||| |||||||||||||||    
T  16617280 ctttgttgcaaccacctttg 16617261  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 25 - 279
Target Start/End: Complemental strand, 16617719 - 16617459
Alignment:
Q  25 acacaccaacactcaaaggatttctcccttgattaaagaaaccaataatcaaaatcaggattctcggaaacctaatcttggt--taaagagcaaagttct 122  Q
    |||| |||||||||| |||||||| |||||||   |||||| ||||||||||||||| ||||||| |||||||| |||||||  | |||||| | || ||    
T  16617719 acacgccaacactcagaggatttcacccttgaaagaagaaagcaataatcaaaatcaagattctcagaaacctactcttggttctgaagagctatgtcct 16617620  T
Q  123 gcagtacagcgaccgattaaagtggttggcctctaaaacttgtgc-----ctttatttgttttctcattaactcgtaaaagttgagtgttgatacgtagt 217  Q
    | | | ||  ||  ||| |||||||| ||||| | ||||||||||     | |||||| |||| ||||| |||| ||||||||||||| |||||| ||||    
T  16617619 gaaatgcaaagattgataaaagtggtaggcctat-aaacttgtgcttgcaccttatttattttttcattgactcataaaagttgagtgctgatacatagt 16617521  T
Q  218 aaattctttgaattttatattatttttagatggcatctatttcgcctaaagcatttagtgca 279  Q
    ||||||  ||||| | ||||| |||| ||||  ||||||| |||||| ||||| | ||||||    
T  16617520 aaattcaatgaatctgatatttttttcagataacatctatgtcgcctgaagcactaagtgca 16617459  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 377 - 501
Target Start/End: Complemental strand, 16629739 - 16629615
Alignment:
Q  377 taccgacctttattgttctcgaaggcgaagtcttgccactcaagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgacttgcaa 476  Q
    |||| |||||||||  || |||||| | ||||| |||||| |||| ||| || || |||  |||||||||||| ||||| ||| ||||| ||||||||||    
T  16629739 taccaacctttattagtcccgaaggtggagtctcgccactaaagtgtttgaactaaatttgatattgatgcattttcatcagctagattatgacttgcaa 16629640  T
Q  477 ttatttgttcccacaggatggaaaa 501  Q
    | |||||||||||||||||||||||    
T  16629639 tgatttgttcccacaggatggaaaa 16629615  T

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Target: chr8; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 377 - 501
Target Start/End: Complemental strand, 16638620 - 16638496
Alignment:
Q  377 taccgacctttattgttctcgaaggcgaagtcttgccactcaagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgacttgcaa 476  Q
    |||| |||||||||  || |||||| | ||||| |||||| |||| ||| || || |||  |||||||||||| ||||| ||| ||||| ||||||||||    
T  16638620 taccaacctttattagtcccgaaggtggagtctcgccactaaagtgtttgaactaaatttgatattgatgcattttcatcagctagattatgacttgcaa 16638521  T
Q  477 ttatttgttcccacaggatggaaaa 501  Q
    | |||||||||||||||||||||||    
T  16638520 tgatttgttcccacaggatggaaaa 16638496  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 25 - 270
Target Start/End: Complemental strand, 16638927 - 16638673
Alignment:
Q  25 acacaccaacactcaaaggatttctcccttgattaaagaaaccaataatcaaaatcaggattctcggaaacctaatcttggtta--aagagcaaagttct 122  Q
    ||||||||||||||| |||||||| || |||||  |||||| ||||||||| ||||| | ||||| |||||||| ||| ||||   |||||| |||| ||    
T  16638927 acacaccaacactcagaggatttcaccattgatagaagaaatcaataatcataatcaagtttctcagaaacctactctcggttctgaagagctaagtcct 16638828  T
Q  123 gcagtacagcgaccgattaaagtggttggcctctaaaac-ttgtgcctt-----tatttgttttctcattaactcgtaaaagttgagtgttgatacgtag 216  Q
    | | | || |||  |||||||| ||| ||||| ||||   || ||||||     ||||  |||| ||||| |||||||||||||||||| |||||| |||    
T  16638827 gaaatgcaacgattgattaaagcggtaggcctataaactattatgccttccccttattgattttgtcattgactcgtaaaagttgagtgctgatacatag 16638728  T
Q  217 taaattctttgaattttatattattttt-agatggcatctatttcgcctaaagca 270  Q
    |||||||  ||||| | ||||| ||||| ||||| |||||||||| ||| |||||    
T  16638727 taaattcaatgaatctgatattttttttcagatgacatctatttcacctcaagca 16638673  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 405 - 499
Target Start/End: Complemental strand, 16629403 - 16629309
Alignment:
Q  405 agtcttgccactcaagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgacttgcaattatttgttcccacaggatggaa 499  Q
    ||||| || ||| |||| ||| || ||||||  |||||||||||| ||| |  |||||||| ||||||||||| |||||||||||||||||||||    
T  16629403 agtctcgctacttaagtgtttgaactacatttgatattgatgcattttcctctgcaagattatgacttgcaatgatttgttcccacaggatggaa 16629309  T

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Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 405 - 499
Target Start/End: Complemental strand, 16638284 - 16638190
Alignment:
Q  405 agtcttgccactcaagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgacttgcaattatttgttcccacaggatggaa 499  Q
    ||||| || ||| |||| ||| || ||||||  |||||||||||| ||| |  |||||||| ||||||||||| |||||||||||||||||||||    
T  16638284 agtctcgctacttaagtgtttgaactacatttgatattgatgcattttcctctgcaagattatgacttgcaatgatttgttcccacaggatggaa 16638190  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 25 - 270
Target Start/End: Complemental strand, 16630047 - 16629792
Alignment:
Q  25 acacaccaacactcaaaggatttctcccttgattaaagaaaccaataatcaaaatcaggattctcggaaacctaatcttggtta--aagagcaaagttct 122  Q
    ||||||||||||||| || ||||| || |||||  |||||| ||||||||| ||||| | || || |||||||| ||| ||||   ||||||||||| ||    
T  16630047 acacaccaacactcagagaatttcaccattgatagaagaaagcaataatcataatcaagtttgtcagaaacctactctcggttctgaagagcaaagtcct 16629948  T
Q  123 gcagtacagcgaccgattaaagtggttggcctctaaaacttg-tgcct-----ttatttgttttctcattaactcgtaaaagttgagtgttgatacgtag 216  Q
      | | || |||  |||||||| ||||||||| ||||  ||  |||||     |||||| |||| | || ||||||||||||||||||| |||||| |||    
T  16629947 caaatgcaacgattgattaaagcggttggcctataaacttttatgcctgctccttatttattttgtaatcaactcgtaaaagttgagtgctgatacatag 16629848  T
Q  217 taaattctttgaattttatattattttt--agatggcatctatttcgcctaaagca 270  Q
    |||||||  ||||| | ||||| |||||  ||||| || ||||||| ||| |||||    
T  16629847 taaattcaatgaatctgatatttttttttcagatgacaactatttcacctcaagca 16629792  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 530
Target Start/End: Original strand, 15110407 - 15110451
Alignment:
Q  486 cccacaggatggaaaaagcctcgcagcttttttgcaaccaccttt 530  Q
    |||||||||||||||| || |||||||||| ||||||||||||||    
T  15110407 cccacaggatggaaaatgcatcgcagctttgttgcaaccaccttt 15110451  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 531
Target Start/End: Complemental strand, 16629039 - 16628968
Alignment:
Q  460 aagattctgacttgcaattatttgttcccacaggatggaaaaagcctcgcagcttttttgcaaccacctttg 531  Q
    |||||| ||||||| ||| ||||||||||||||||||||||| || ||||  ||||  ||||||| ||||||    
T  16629039 aagattatgacttgaaatgatttgttcccacaggatggaaaatgcgtcgcgtctttgatgcaaccccctttg 16628968  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 531
Target Start/End: Complemental strand, 16637920 - 16637849
Alignment:
Q  460 aagattctgacttgcaattatttgttcccacaggatggaaaaagcctcgcagcttttttgcaaccacctttg 531  Q
    |||||| ||||||| ||| ||||||||||||||||||||||| || ||||  ||||  ||||||| ||||||    
T  16637920 aagattatgacttgaaatgatttgttcccacaggatggaaaatgcgtcgcgtctttgatgcaaccccctttg 16637849  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 15110262 - 15110332
Alignment:
Q  28 caccaacactcaaaggatttctcccttgattaaagaaaccaataatcaaaatcaggattctcggaaaccta 98  Q
    |||||||||||| |||||||| |||||||   || ||| ||||||||| ||||| ||||||| ||||||||    
T  15110262 caccaacactcagaggatttcacccttgaaagaacaaagcaataatcagaatcaagattctcagaaaccta 15110332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 43 - 528
Target Start/End: Complemental strand, 38878232 - 38877741
Alignment:
Q  43 gatttctcccttgattaaagaaaccaataatcaaaatcaggattctcggaaacctaatcttggtta--aagagcaaagttctgcagtacagcgaccgatt 140  Q
    |||||| |||||||||||||||| |||||| |||||||| | |||||  || |||| ||| ||||   ||||||||| | ||||| | ||||||  | ||    
T  38878232 gatttcacccttgattaaagaaaacaataaccaaaatcaagtttctcaaaagcctactctcggttctgaagagcaaaatcctgcaattcagcgaatgctt 38878133  T
Q  141 aaagtggttggcctctaaaacttgtgcc-----tttatttgttttctcattaactcgtaaaagttgagtgttgatacgtagtaaattctttgaattttat 235  Q
    || ||||| ||||| ||||||||||| |     |||||||||||| || || ||| |||| || |||||| |||||| ||||||||||| ||||| | |     
T  38878132 aacgtggtaggcctataaaacttgtgtcagatctttatttgttttttccttgacttgtaagagatgagtgctgatacatagtaaattctatgaatctaa- 38878034  T
Q  236 attatttttagatggcatctatttcgcctaaagcatttagtgcaacacttgatgaaatttaagacgttgtccattttaagaatgaaataccagaggaaaa 335  Q
    |||||||| || || |||| ||||||||| ||||| | |||  |  | ||| ||  ||| |||| || |||| ||| ||  ||||||| |||| || | |    
T  38878033 attattttcagctgacatccatttcgcctgaagcactgagtcaaggagttggtggtattaaagaggtggtccgtttgaatgatgaaattccaggggcaga 38877934  T
Q  336 attgttatataaactgcctgagatggttcgtgaagtaggattaccgacctttattgttctcgaaggcgaagtcttgccactcaagtatttaaattacatt 435  Q
    ||||||| || || |||| |||||||||  |||| ||||| |||| ||||||| | ||| |||||| |  | | || |||| |||| ||||| |||||||    
T  38877933 attgttaaatcaaatgccagagatggttgatgaactaggactaccaacctttactattcccgaaggtgtggacctgtcactaaagtgtttaatttacatt 38877834  T
Q  436 gaatattgatgcatgttcatgagcaagattctgacttgcaattatttgttcccacaggatggaaaaagcctcgcagcttttttgcaaccacct 528  Q
      | |||||||||||||||| ||||||||||||||||| ||| ||||  |||||||| |||||||| ||||| ||||||| ||||||||||||    
T  38877833 tgacattgatgcatgttcatcagcaagattctgacttgtaatgatttactcccacagcatggaaaatgcctcacagctttgttgcaaccacct 38877741  T

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