View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19858_high_10 (Length: 381)
Name: NF19858_high_10
Description: NF19858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19858_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 172955 - 172820
Alignment:
| Q |
1 |
tctattcctcacattcaacaaaattgaattcaactaaaacctgatagatcgtattaaattgaattagtaatgatttaataacgacatttcgaaatcacgt |
100 |
Q |
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| T |
172955 |
tctattcctcacattcaacaaaattcaattcaactaaaacctgatagatcgtattaaattgaattagtaatgatttaataacgacatttcgaaatcacgt |
172856 |
T |
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| Q |
101 |
atatagatctaaatgcatcggcatttaagatttcat |
136 |
Q |
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| T |
172855 |
atatagatctaaatgcatcggcattttagatttcat |
172820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 172782 - 172717
Alignment:
| Q |
174 |
agatctaataatgcttacacttgtgagtgaaattagcttcgtctcactccaaaccaaacagaaaca |
239 |
Q |
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| T |
172782 |
agatctaataatgcttacacttgtgagtgaaattagcttcgtctcactccaaaccaaacagaaaca |
172717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 306 - 369
Target Start/End: Complemental strand, 172654 - 172591
Alignment:
| Q |
306 |
agttttgagtttaattaattaattgattaattaacgtgtcatatattgttaagctgtcaatatt |
369 |
Q |
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| T |
172654 |
agttttgagtttaattaattaattgattaattaacgtgtcatatattgttaagctgtcaatatt |
172591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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