View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19858_high_18 (Length: 228)
Name: NF19858_high_18
Description: NF19858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19858_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 23302160 - 23301949
Alignment:
| Q |
1 |
acttgatctgaaggtagtaaatcatgattgtggttagatataaattcaataacctgccactcttctggaaaaatctcaaaggatttcttcaatttgattg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
23302160 |
acttgatctgaaggtagtaaatcatgattgtggttagatataaattcaataacctgccactcttctggaaaaatctctaaggatttcttcaatttgattg |
23302061 |
T |
|
| Q |
101 |
tcatgcttgccttgcatccacatctcgaagatggtctatttcgttgttctttagacggatcttgaannnnnnnatcaggaaatcctccacggtgacaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
23302060 |
tcatgcttgccttgcatccacatctcgaagatggtctatttcgttgttctttagacggatcttgaatttttttatcaggaaatcctcctcggtgacaaaa |
23301961 |
T |
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| Q |
201 |
caaatctctcct |
212 |
Q |
| |
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|||||||||||| |
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| T |
23301960 |
caaatctctcct |
23301949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 16150151 - 16150362
Alignment:
| Q |
1 |
acttgatctgaaggtagtaaatcatgattgtggttagatataaattcaataacctgccactcttctggaaaaatctcaaaggatttcttcaatttgattg |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16150151 |
acttgatctgaaggtagtaaatcatgattgtggttagatataaattcaaaaacctgccactcttctggaaaaatctcgaaggatttcttcaatttgattg |
16150250 |
T |
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| Q |
101 |
tcatgcttgccttgcatccacatctcgaagatggtctatttcgttgttctttagacggatcttgaannnnnnnatcaggaaatcctccacggtgacaaaa |
200 |
Q |
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| T |
16150251 |
tcatgcttgccttgcatccacatctcgaagatggtctatttcgttgttctttagacggatcttgaatttttttatcaggaaatcctccgcggtgacaaaa |
16150350 |
T |
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| Q |
201 |
caaatctctcct |
212 |
Q |
| |
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|||||||||||| |
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| T |
16150351 |
caaatctctcct |
16150362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 4652751 - 4652958
Alignment:
| Q |
1 |
acttgatctgaaggtagtaaatcatgattgtggttagatataaattcaataacctgccactcttctggaaaaatctcaaaggatttcttcaatttgattg |
100 |
Q |
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|
|||||||||||||||||||||| |||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4652751 |
acttgatctgaaggtagtaaattatgattgtggctggatataaattcaatatcctgccactcttctggaaaaatctcaaaggatttcttcaatttgattg |
4652850 |
T |
|
| Q |
101 |
tcatgcttgccttgcatccacatctcgaagatggtctatttcgttgttctttagacggatcttgaannnnnnnatcaggaaatcctccacggtgacaaaa |
200 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| |
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| T |
4652851 |
tcatgcttgccttgcatcc--------aagattgtctatttcgttgttctttagacggatcatgattttttttatcagaaaatcctccacggtgacaaaa |
4652942 |
T |
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| Q |
201 |
caaatctctcctatgc |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
4652943 |
caaatctctcctatgc |
4652958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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