View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19858_high_22 (Length: 213)
Name: NF19858_high_22
Description: NF19858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19858_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 47875534 - 47875715
Alignment:
| Q |
16 |
tactcgatgtgaccatgcaaattggattagatgagcaacctctagcttaagagttcatcttccacaccctttttatattaaataaacaaggcctataaac |
115 |
Q |
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| T |
47875534 |
tactcgatgtgaccatgcaaattggattagatgagcaacctctagcttaagagttcatcttccacaccctttttatattaaataaacaaggcctataaac |
47875633 |
T |
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| Q |
116 |
aatagaaaagacaattcannnnnnnncttcacgttacacaagaactggtaaacaaagttctggagagaaaggtttaaaaagt |
197 |
Q |
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| T |
47875634 |
aatagaaaagacaattctttttttttcttcacgttacacaagaactggtaaacaaagttctggagagaaaggtttaaaaagt |
47875715 |
T |
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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 47869999 - 47869950
Alignment:
| Q |
31 |
tgcaaattggattagatgagcaacctctagcttaagagttcatcttccac |
80 |
Q |
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||||||||||| || |||||||||||||||| | |||||| ||||||||| |
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| T |
47869999 |
tgcaaattggaatacatgagcaacctctagcattagagttgatcttccac |
47869950 |
T |
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