View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19858_high_4 (Length: 544)
Name: NF19858_high_4
Description: NF19858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19858_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 254 - 529
Target Start/End: Original strand, 20182851 - 20183126
Alignment:
| Q |
254 |
catgtaaggctatttataaccacatagacttatcctacgttgtaacgacaatcaaatgaaatgtttacagtgtctaaaccgatcaaaaatgcataaaaga |
353 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
20182851 |
catgcaaggctatttataaccacatagacttatcctacattgtaacgacactcaaatgaaatgtttacaatgtctaaacctatcaaaaatgcataaaaga |
20182950 |
T |
|
| Q |
354 |
caccacaaactgtccaatcctttggtgtaacaccaccgttcacagtctaggatggtttggattttataagtagaatatttcgaaagtattttggattata |
453 |
Q |
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||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20182951 |
caccacaaactgtccaaccctttggtgtaacgccaccgttcacagtctaggatggtttggattttataagtagaatatttcggaagtattttggattata |
20183050 |
T |
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| Q |
454 |
taatttgaattgtgcgagaatgtgtttaagcttgatctttgatgtataatactgggaaaaaagtaaataacataat |
529 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| |
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| T |
20183051 |
taatttgaattgtgcgagactgtgtttaagcttgatctttgatgtataatattggggaaaaagtaaatagcataat |
20183126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 20182614 - 20182788
Alignment:
| Q |
17 |
ttgtagggattttcagattatgaaatctgaaaatagtaaaattaataaaatgtgttgtgattaatatgaaaggcttctgttgaccgtcgtacgatcctgc |
116 |
Q |
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||||||| |||||| ||||| |||||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||||||||||||||||||| |||| |
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| T |
20182614 |
ttgtaggtattttcggattacgaaatctgaaaatagtaaaactaatcaaatgtgttgttattaatatgaaaggtttctgttgaccgtcgtacgattctgc |
20182713 |
T |
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| Q |
117 |
aaaaatctgcaaagcaatttcaaaaattgtatgatcggtcacagtcaccatgatatcataaaacatcccttaact |
191 |
Q |
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| T |
20182714 |
aaaaatctgcaaagcaatttcagaaattgtatgatcggtcacagtcaccatgatatcataaaacaccccttaact |
20182788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 360
Target Start/End: Complemental strand, 52432956 - 52432901
Alignment:
| Q |
305 |
tcaaatgaaatgtttacagtgtctaaaccgatcaaaaatgcataaaagacaccaca |
360 |
Q |
| |
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|||||||||| |||| |||||||||||||||||||||| ||| ||| |||||||| |
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| T |
52432956 |
tcaaatgaaacatttaaagtgtctaaaccgatcaaaaatacattaaacacaccaca |
52432901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 27060124 - 27060072
Alignment:
| Q |
317 |
tttacagtgtctaaaccgatcaaaaatgcataaaagacaccacaaactgtcca |
369 |
Q |
| |
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|||||| ||||||||||||| |||||||||| ||| |||||||| || ||||| |
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| T |
27060124 |
tttacaatgtctaaaccgattaaaaatgcattaaacacaccacagaccgtcca |
27060072 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 421
Target Start/End: Original strand, 25879573 - 25879683
Alignment:
| Q |
312 |
aaatgtttacagtgtctaaaccgatcaaaaat-gcataaaagacaccacaaactgtccaatcctttggtgtaacaccaccgttcacagtctaggatggtt |
410 |
Q |
| |
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|||||||||| |||||||||||| ||||||| ||| ||| ||||||||||| ||| || |||||||||||| || | | |||||||| |||||||| |
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| T |
25879573 |
aaatgtttaccatgtctaaaccgaccaaaaataacattaaacacaccacaaacagtctaaacctttggtgtaatgtcatcatccacagtctgggatggtt |
25879672 |
T |
|
| Q |
411 |
tggattttata |
421 |
Q |
| |
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|||||| |||| |
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| T |
25879673 |
tggattatata |
25879683 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 494
Target Start/End: Complemental strand, 16726851 - 16726638
Alignment:
| Q |
281 |
acttatcctacgttgtaacgacaatcaaatgaaatgtttacagtgtctaaaccgatcaaaaa-tgcataaaagacaccacaaactgtccaatcctttggt |
379 |
Q |
| |
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|||||||||| |||||| ||||| ||| |||||||||||| || ||||||||| ||||| | ||| ||| ||||| |||||| ||||| ||| | | |
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| T |
16726851 |
acttatcctagagtgtaactacaattaaa-gaaatgtttacaatgcctaaaccgacaaaaaaatacattaaacacaccccaaactatccaaacctctatt |
16726753 |
T |
|
| Q |
380 |
gtaacaccaccgttcacagtctaggatggtttggattttataagtagaatatttcgaaagtattttggattatataatttgaattgtgcgagaatgtgtt |
479 |
Q |
| |
|
||||| ||||| | || ||||| ||||||| ||||| |||| || ||| ||||| || |||| | |||||||||||||||||| | | | |||||| |
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| T |
16726752 |
gtaacgccaccatccattgtctatgatggttcggattatatatgtcgaacatttcagtagcatttcagcttatataatttgaattgtcctacattgtgtt |
16726653 |
T |
|
| Q |
480 |
taagcttgatctttg |
494 |
Q |
| |
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||||| ||||||||| |
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| T |
16726652 |
taagcatgatctttg |
16726638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 383
Target Start/End: Complemental strand, 16490196 - 16490107
Alignment:
| Q |
294 |
tgtaacgacaatcaaatgaaatgtttacagtgtctaaaccgatcaaaaatgcataaaagacaccacaaactgtccaatcctttggtgtaa |
383 |
Q |
| |
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|||||| ||| ||||| || | |||||| || ||||||||| ||||||| ||| ||| ||||||||||| ||| || |||||||||||| |
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| T |
16490196 |
tgtaactacattcaaaggatacgtttacgatgcctaaaccgaccaaaaatacattaaacacaccacaaaccgtcaaaacctttggtgtaa |
16490107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 369
Target Start/End: Original strand, 21217422 - 21217498
Alignment:
| Q |
293 |
ttgtaacgacaatcaaatgaaatgtttacagtgtctaaaccgatcaaaaatgcataaaagacaccacaaactgtcca |
369 |
Q |
| |
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||||||| ||| ||||| |||| ||||| | |||||||||||| |||||||| | ||| ||||||||||| ||||| |
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| T |
21217422 |
ttgtaactacattcaaaggaaacgtttataatgtctaaaccgaccaaaaatgtaccaaacacaccacaaaccgtcca |
21217498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 380
Target Start/End: Complemental strand, 25631378 - 25631334
Alignment:
| Q |
336 |
tcaaaaatgcataaaagacaccacaaactgtccaatcctttggtg |
380 |
Q |
| |
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|||||||||||| ||| ||||||| |||||||||| ||||||||| |
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| T |
25631378 |
tcaaaaatgcattaaacacaccactaactgtccaaacctttggtg |
25631334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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