View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19858_low_1 (Length: 924)
Name: NF19858_low_1
Description: NF19858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19858_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 657; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 1 - 710
Target Start/End: Original strand, 43090280 - 43090992
Alignment:
| Q |
1 |
tcccaaacaaactcttgaaccaccttatggttctacccattggttgtagtgtttgaggacttggaagaatactagtgcaagttgaagtgtgaaaattaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43090280 |
tcccaaacaaactcttgaaccaccttatggttctacccattggttgtagtgtttgaggacttggaagaatactagtgcaagttgaagtgtgaaaattaac |
43090379 |
T |
|
| Q |
101 |
ctacaaaaacacaaacaagtcacagtttattaagaccaaagaaaatgcctcgtgaaaaactacattacatgacaaaaacacacctctggaacatggggtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43090380 |
ctacaaaaacacaaacaagtcacagtttattaagaccaaagaaaatgcctcgtgaaaaactacattacatgacaaaaacacacctctggaacatggggtg |
43090479 |
T |
|
| Q |
201 |
aagcatggaaagcaaaatcaaacaacattaaaataatgaagtatataatgtatagagtgtgacattgcattgtggggctttatacattacacacatgaac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43090480 |
aagcatggaaagcaaaatcaaacaacattaaaataatgaagtatataatatatagagtgtgacattgcattgtggggctttatacattacacacatgaac |
43090579 |
T |
|
| Q |
301 |
aacttacaaagtaacaaaccatgttatgttactattaaacaaatagaannnnnnnatgtagtaaaaaagaatcaccttggaagaatcaaattcttgaaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43090580 |
aacttacaaagtaacaaaccatgttatgttactattaaacaaatagaa--tttttatgtagtaaaaaagaaacaccttggaagaatcaaattcttgaaag |
43090677 |
T |
|
| Q |
401 |
gtaaagcagttcaaaagttgtaaaagaagaagtggtggaaagtgaaagacccaaaattgtccatggaactcagaaaaagaagagaagtgaaacagaagag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43090678 |
gtaaagcagttcaaaagttgtaaaagaagaagtggtggaaagtgaaagacccaaaattgtccatggaactcagaaaaagaagagaagtgaaacagaagag |
43090777 |
T |
|
| Q |
501 |
gcccacagtgaaattatatgtatgttcaatgttcattcattcatctgtccctccctatgagcgacttgtccttaaaaaagatagatac-----ttcagtg |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43090778 |
gcccacagtgaaattatatgtatgttcaatgttcattcattcatctgtccctccctatgagcgacttgtccttaaaaaagatagatacttcagttcagtg |
43090877 |
T |
|
| Q |
596 |
tcctaaaatatctgacacactcttgaatgcattcctagttaatcttcccttcccttatagttataacaaatatatcaacttcttcttctgctaaatttct |
695 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43090878 |
tcctaaaatatctgacacactcttgaatgcattcctagttaatcttcccatcccttatagttataacaaatatatcaacttcttcttctgctaaatttct |
43090977 |
T |
|
| Q |
696 |
tcaatgtgtgtgtat |
710 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
43090978 |
tcaatgtgtgtgtat |
43090992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 711 - 905
Target Start/End: Original strand, 43091052 - 43091246
Alignment:
| Q |
711 |
aactccctaaatcaaagaaacagtttgtgattgtgtgactcgtaaaaagaaatcgaataattcatctttctttcttctgaatatggttctgttactttta |
810 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43091052 |
aactccctaaatcaaagaaaaagtttgtgattgtgtgactcgtaaaaagaaatcgaataattcatctttctttcttctgaatatggttctgttactttta |
43091151 |
T |
|
| Q |
811 |
tgcattaaagctgaaccaataaaagatagctttttagatgaatcaacattgttcctttttccatctccaacaccctactactacctaatacatac |
905 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43091152 |
tgcattaaagctgaaccaataaaagatagctttttagatgaatcaacattgttcctttttccatctccaacaccctactactacctaatacatac |
43091246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University