View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19858_low_10 (Length: 415)
Name: NF19858_low_10
Description: NF19858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19858_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 135 - 403
Target Start/End: Original strand, 48931603 - 48931871
Alignment:
| Q |
135 |
tctactaatatatctcctattattagcatccttgatcttgagaagaaaatgaatcaggaaatgaatggtgtggaagctgaaaggccactagagaaaatag |
234 |
Q |
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| T |
48931603 |
tctactaatatatctcctattattagcatccttgatcttgagaagaaaatgaatcaggaaatgaatggtgtggaagctgaaaggccactacagaaaatag |
48931702 |
T |
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| Q |
235 |
attatgtgtttaaggtggttgtgattggtgactcagcagtaggaaagactcaaatgctgtcaaggtttgcaaagaatgagttctgctttgactcaaaatc |
334 |
Q |
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| T |
48931703 |
attatgtgtttaaggtggttgtgattggtgactcggcagtaggaaagactcaaatgctgtcaaggtttgcaaagaatgagttctgctttgactcaaaatc |
48931802 |
T |
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| Q |
335 |
aaccattggagttgaatttcagactagaactgtcacaattaatggtaaactcatcaaagctcagatctg |
403 |
Q |
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| T |
48931803 |
aaccattggagttgaatttcagactagaactgtcacaattaatggtaaactcatcaaagctcagatctg |
48931871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 48931468 - 48931508
Alignment:
| Q |
18 |
cattaaattaaattaaagggggagaattcttccacactggt |
58 |
Q |
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| T |
48931468 |
cattaaattaaattaaagggggagaattcttccacactggt |
48931508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 224 - 403
Target Start/End: Complemental strand, 9527780 - 9527601
Alignment:
| Q |
224 |
agagaaaatagattatgtgtttaaggtggttgtgattggtgactcagcagtaggaaagactcaaatgctgtcaaggtttgcaaagaatgagttctgcttt |
323 |
Q |
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| T |
9527780 |
agagaaaatagattatgtgtttaaggttgttgtcattggtgactcagcagtaggaaagactcaaatactatcaaggttttcaaagaatgagttttgcttt |
9527681 |
T |
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| Q |
324 |
gactcaaaatcaaccattggagttgaatttcagactagaactgtcacaattaatggtaaactcatcaaagctcagatctg |
403 |
Q |
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|||||||| ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||| | || |||||||||||||| |
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| T |
9527680 |
gactcaaagtcaactattggtgttgaatttcaaactaggactgtcactattaatggtaaagtaattaaagctcagatctg |
9527601 |
T |
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