View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19858_low_12 (Length: 353)

Name: NF19858_low_12
Description: NF19858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19858_low_12
NF19858_low_12
[»] chr2 (3 HSPs)
chr2 (18-339)||(2015266-2015587)
chr2 (250-338)||(11845093-11845181)
chr2 (250-338)||(11849822-11849910)
[»] chr3 (6 HSPs)
chr3 (20-336)||(40568151-40568467)
chr3 (36-339)||(40579225-40579528)
chr3 (20-339)||(40572752-40573071)
chr3 (20-326)||(40601707-40602013)
chr3 (23-339)||(40597542-40597858)
chr3 (49-339)||(40591086-40591376)
[»] chr4 (3 HSPs)
chr4 (257-338)||(13765720-13765800)
chr4 (229-306)||(14155044-14155120)
chr4 (250-332)||(14153489-14153568)
[»] chr1 (5 HSPs)
chr1 (229-317)||(1868401-1868489)
chr1 (256-316)||(9161976-9162036)
chr1 (256-332)||(9229754-9229830)
chr1 (256-317)||(1842819-1842880)
chr1 (268-316)||(9156064-9156112)


Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 2015587 - 2015266
Alignment:
Q  18 actacaacaacaactagtgaggcacggaggctcaactgaaacaactaaagtcttcactgttgaggagctaaatgaagcaaccaacaacttcgacgaaggc 117  Q
    |||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2015587 actacaacaagaagtagtgaggcacggagggtcaactgaaacaactaaagtcttcactgttgaggagctaaatgaagcaaccaacaacttcgacgaaggc 2015488  T
Q  118 aagattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgaccctaacc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2015487 aagattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgaccctaacc 2015388  T
Q  218 agattgatccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttccttt 317  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2015387 agattgagccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttccttt 2015288  T
Q  318 acttgtttacgaattcattccc 339  Q
    ||||||||||||||||||||||    
T  2015287 acttgtttacgaattcattccc 2015266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 11845093 - 11845181
Alignment:
Q  250 ctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttgtttacgaattcattcc 338  Q
    ||||||||||||||| ||||||||||||| ||| | || || |||||||| ||||||||| |||| || |||||||| |||||||||||    
T  11845093 ctttcacaaatcaacaatagaaatgtggtcaagatattaggatgttgtttggagacagaaattccattgcttgtttatgaattcattcc 11845181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 11849822 - 11849910
Alignment:
Q  250 ctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttgtttacgaattcattcc 338  Q
    ||||||||||||||| ||||||||||||| ||| | || || |||||||| ||||||||| |||| || |||||||| |||||||||||    
T  11849822 ctttcacaaatcaacaatagaaatgtggtcaagatattaggatgttgtttggagacagaaattccattgcttgtttatgaattcattcc 11849910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 40568151 - 40568467
Alignment:
Q  20 tacaacaacaactagtgaggcacggaggctcaactgaaacaactaaagtcttcactgttgaggagctaaatgaagcaaccaacaacttcgacgaaggcaa 119  Q
    ||||||||||  |||| ||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| || ||||| ||    
T  40568151 tacaacaacagatagttaggcatggagggtcaactgaaacagctaaagtgttcactgttgaggagctaaatgaagcaaccaataactttgatgaaggtaa 40568250  T
Q  120 gattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgaccctaaccag 219  Q
    ||| ||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| || || ||||||||| |||||||||| ||||||    
T  40568251 gatcctaggccaaggtggtcagggaactgtttacaaaggagttttacaaaataaaagaattgtagcaataaaaaagtccaaagtcagtgacccaaaccag 40568350  T
Q  220 attgatccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttac 319  Q
    ||||| |||||||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  40568351 attgagccgttcatcaatgaagtggtcgttctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcccttgc 40568450  T
Q  320 ttgtttacgaattcatt 336  Q
    ||||||| |||||||||    
T  40568451 ttgtttatgaattcatt 40568467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 36 - 339
Target Start/End: Original strand, 40579225 - 40579528
Alignment:
Q  36 gaggcacggaggctcaactgaaacaactaaagtcttcactgttgaggagctaaatgaagcaaccaacaacttcgacgaaggcaagattctaggccaagga 135  Q
    |||||| ||||| |||||||||| | ||||||||||||  |||||||||||||| || ||||||||||||||||| ||||||| ||| |||||||||||     
T  40579225 gaggcatggaggttcaactgaaatagctaaagtcttcaaagttgaggagctaaaagatgcaaccaacaacttcgatgaaggcacgatcctaggccaaggt 40579324  T
Q  136 ggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgaccctaaccagattgatccgttcatca 235  Q
    ||||||||||  |||||||||||||||||||||||||| ||||||||||| || || ||||||||||| |||||||| |||||||||||  |||||||||    
T  40579325 ggtcagggaattgtttacaaaggagttttacaagataacagaattgtagcaataaaaaagtccaaaataagtgacccgaaccagattgagtcgttcatca 40579424  T
Q  236 atgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttgtttacgaattcat 335  Q
    |||||||| |  | ||||| |||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  40579425 atgaagtggtcattctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtttacgaatttat 40579524  T
Q  336 tccc 339  Q
    ||||    
T  40579525 tccc 40579528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 339
Target Start/End: Original strand, 40572752 - 40573071
Alignment:
Q  20 tacaacaacaactagtgaggcacggaggctcaactgaaacaactaaagtcttcactgttgaggagctaaatgaagcaaccaacaacttcgacgaaggcaa 119  Q
    ||||||||||  ||| |||||||||||| |||||||||| | ||||||||||||  |||||||||||||| ||||||||||||||||||||  |||||||    
T  40572752 tacaacaacagatagggaggcacggaggttcaactgaaatagctaaagtcttcaaagttgaggagctaaaagaagcaaccaacaacttcgatcaaggcaa 40572851  T
Q  120 gattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgaccctaaccag 219  Q
    ||| ||||||||||| ||||| ||||  ||||||||||||||||||||| |||| ||||||||||| || || ||||||||||| |||||||| ||||||    
T  40572852 gatcctaggccaaggtggtcaaggaattgtttacaaaggagttttacaaaataacagaattgtagcaataaaaaagtccaaaataagtgacccgaaccag 40572951  T
Q  220 attgatccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttac 319  Q
     ||||  ||||||||||||||||| | || ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||     
T  40572952 gttgagtcgttcatcaatgaagtggtcgtactttcccaaatcaaccatagaaatgtggtaaagatcttgggctgttgtttagagacagaagttcccttag 40573051  T
Q  320 ttgtttacgaattcattccc 339  Q
    |||| || ||||| ||||||    
T  40573052 ttgtgtatgaatttattccc 40573071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 40601707 - 40602013
Alignment:
Q  20 tacaacaacaactagtgaggcacggaggctcaactgaaacaactaaagtcttcactgttgaggagctaaatgaagcaaccaacaacttcgacgaaggcaa 119  Q
    ||||||||||| |||  | ||| ||||| ||| | | |||| |||||||||||||| |||||||||||||| ||||||||||||||||| | ||| |||     
T  40601707 tacaacaacaaatagcaaagcatggaggatcagccggaacacctaaagtcttcactattgaggagctaaataaagcaaccaacaacttcaatgaaagcag 40601806  T
Q  120 gattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgaccctaaccag 219  Q
    ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || || || ||||||| |||||||||||  ||||||    
T  40601807 gatcctaggccaaggtggtcagggaacagtttacaaaggagttttacaagataacagaattgtcgcaataaaaaagtccacaatcagtgaccaaaaccag 40601906  T
Q  220 attgatccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttac 319  Q
    ||||| ||||||||||||||||||||  | ||||| |||||||||||||||||||||||| |||| |||||||| |||||||| ||||||||||| || |    
T  40601907 attgagccgttcatcaatgaagtgatcattctttctcaaatcaaccatagaaatgtggtacagcttttgggttgctgtttagaaacagaagttccattgc 40602006  T
Q  320 ttgttta 326  Q
    |||||||    
T  40602007 ttgttta 40602013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 23 - 339
Target Start/End: Original strand, 40597542 - 40597858
Alignment:
Q  23 aacaacaactagtgaggcacggaggctcaactgaaacaactaaagtcttcactgttgaggagctaaatgaagcaaccaacaacttcgacgaaggcaagat 122  Q
    |||||||| |||||| ||| ||||| ||  || |||||  |||| |||||||| |||||||| ||||||| ||||||| ||||||| | |||||||| ||    
T  40597542 aacaacaaatagtgaagcatggagggtcgtctaaaacacttaaaatcttcactattgaggagttaaatgaggcaaccagcaacttcaatgaaggcaaaat 40597641  T
Q  123 tctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgaccctaaccagatt 222  Q
     ||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||| || |||||||| |||||||||||||| |||||||||    
T  40597642 cctaggccaaggtggtcagggaacagtttacaaaggagttttagaagataaaagtattgtagcaataaagaagtcaaaaatcagtgacccaaaccagatt 40597741  T
Q  223 gatccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttg 322  Q
    ||  |||||||||||||||||   |||||||| |||||||||||||| ||||||||||| ||  | |||||||||||||| ||||||||||| || ||||    
T  40597742 gagtcgttcatcaatgaagtggccgtgctttcccaaatcaaccataggaatgtggtaaaacttgtaggttgttgtttagaaacagaagttccattgcttg 40597841  T
Q  323 tttacgaattcattccc 339  Q
    |||| ||||| ||||||    
T  40597842 tttatgaatttattccc 40597858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 49 - 339
Target Start/End: Original strand, 40591086 - 40591376
Alignment:
Q  49 tcaactgaaacaactaaagtcttcactgttgaggagctaaatgaagcaaccaacaacttcgacgaaggcaagattctaggccaaggaggtcagggaacag 148  Q
    ||||| |||||| | | ||| |||||| |||||||||||||||||||||| ||||| || || ||||| |||||||||||| ||||   |||||||||||    
T  40591086 tcaaccgaaacacccagagtgttcactattgaggagctaaatgaagcaactaacaattttgatgaaggaaagattctaggcaaaggttctcagggaacag 40591185  T
Q  149 tttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgaccctaaccagattgatccgttcatcaatgaagtgattgt 248  Q
    |||||||||||||||||||||||||||| |||||||| || || ||||||||||||| |||||  ||||||||||| || ||||||||||||||| | ||    
T  40591186 tttacaaaggagttttacaagataaaagtattgtagcaataaaaaagtccaaaatcaatgaccaaaaccagattgagccattcatcaatgaagtggtcgt 40591285  T
Q  249 gctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttgtttacgaattcattccc 339  Q
     ||||| |||||||||||||||||||||||||   | ||||||||||||||||||||||||||||| || |||||||| ||||||||||||    
T  40591286 tctttctcaaatcaaccatagaaatgtggtaagaattttgggttgttgtttagagacagaagttccattgcttgtttatgaattcattccc 40591376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 338
Target Start/End: Complemental strand, 13765800 - 13765720
Alignment:
Q  257 aaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttgtttacgaattcattcc 338  Q
    ||||||||| || ||||||||||||  | ||| ||||||||||||||||||||||||| |||||| |||||||||| |||||    
T  13765800 aaatcaaccgta-aaatgtggtaaattttttgagttgttgtttagagacagaagttcccttacttctttacgaatttattcc 13765720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 229 - 306
Target Start/End: Original strand, 14155044 - 14155120
Alignment:
Q  229 ttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagaca 306  Q
    |||||||||||| || |||| ||||| |||||||| |||||||||||||||||||| || |||||||| |||||||||    
T  14155044 ttcatcaatgaaatggttgttctttcccaaatcaatcatagaaatgtggtaaagct-tttggttgttgcttagagaca 14155120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 14153568 - 14153489
Alignment:
Q  250 ctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgttt-agagacagaagttcctttacttgtttacgaatt 332  Q
    ||||| ||||||||||||| |||||||||||| || |||||||||| ||| |||||||||||||||    ||||||||||||||    
T  14153568 ctttcccaaatcaaccatataaatgtggtaaatcttttgggttgttttttaagagacagaagttcc----cttgtttacgaatt 14153489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 317
Target Start/End: Original strand, 1868401 - 1868489
Alignment:
Q  229 ttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttccttt 317  Q
    ||||| ||||| ||| |||| || || ||||| || ||||| ||||| || || |||||||| ||||||||||||||||||||||||||    
T  1868401 ttcattaatgaggtggttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttccttt 1868489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 9162036 - 9161976
Alignment:
Q  256 caaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctt 316  Q
    ||||| || ||||||||||| || || |||||||| |||||||||||||||||||||||||    
T  9162036 caaataaatcatagaaatgttgtcaaactcttgggatgttgtttagagacagaagttcctt 9161976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 332
Target Start/End: Complemental strand, 9229830 - 9229754
Alignment:
Q  256 caaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttgtttacgaatt 332  Q
    ||||| || ||||||||||| || || |||||||| |||||||| |||||| ||||||||||||| ||||| |||||    
T  9229830 caaataaatcatagaaatgttgtcaaactcttgggatgttgtttggagacacaagttcctttactagtttatgaatt 9229754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 1842819 - 1842880
Alignment:
Q  256 caaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttccttt 317  Q
    ||||| || ||||| ||||| || || |||||||| ||||||||||||||||||||||||||    
T  1842819 caaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttccttt 1842880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 9156112 - 9156064
Alignment:
Q  268 agaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctt 316  Q
    |||||||| || || |||||||| |||||||||||||||||||||||||    
T  9156112 agaaatgttgtcaaactcttgggatgttgtttagagacagaagttcctt 9156064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University