View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19858_low_15 (Length: 251)
Name: NF19858_low_15
Description: NF19858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19858_low_15 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 6770067 - 6769815
Alignment:
| Q |
10 |
gagatgaaataatagcatagaactaaataaactaactattccattgtttgacttttgttacaaagaaatattaaatagaaaagatannnnnnnna----- |
104 |
Q |
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| T |
6770067 |
gagatgaaataatagcatagaactaaataaactaactattccattgtttgacttttgttacaaagaaatattaaatagaaaatatattttttttagaaaa |
6769968 |
T |
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| Q |
105 |
-------gaaaaggtgtgcaatgaatagaaaaactagatataatcctgcagttgcgcggatatcttgaatgtttagtttgtgannnnnnnnagagaataa |
197 |
Q |
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| T |
6769967 |
gccaaacgaaaaggtgtgcaatgaatagaaaaactagatataatcctgcggttgcgcggatatcttgaatgcttag-ttgtgattttttttagagaataa |
6769869 |
T |
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| Q |
198 |
ataactattaattatatagagtgaagttgttgataacatatgaaagatgagtaa |
251 |
Q |
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| T |
6769868 |
ataactattaattatatagagtgaagttgttgataacatatgaaagataagtaa |
6769815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 6735196 - 6735157
Alignment:
| Q |
20 |
aatagcatagaactaaataaactaactattccattgtttga |
60 |
Q |
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| T |
6735196 |
aatagcata-aactaaataaacaaactattccattgtttga |
6735157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 3067323 - 3067378
Alignment:
| Q |
189 |
agagaataaataactattaatta--tatagagtgaagttgttgataacatatgaaa |
242 |
Q |
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| T |
3067323 |
agagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaa |
3067378 |
T |
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