View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19858_low_16 (Length: 248)

Name: NF19858_low_16
Description: NF19858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19858_low_16
NF19858_low_16
[»] chr6 (9 HSPs)
chr6 (1-150)||(21150697-21150846)
chr6 (5-154)||(33726502-33726654)
chr6 (152-232)||(33726344-33726424)
chr6 (178-228)||(21150642-21150692)
chr6 (24-116)||(21140308-21140401)
chr6 (191-234)||(33714265-33714308)
chr6 (171-232)||(21241737-21241798)
chr6 (171-231)||(21286911-21286971)
chr6 (1-97)||(21233312-21233409)
[»] scaffold0016 (1 HSPs)
scaffold0016 (93-133)||(53912-53952)


Alignment Details
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 21150846 - 21150697
Alignment:
Q  1 ttgatcctgtactttttggtgggagatgacggttttatgatcctctaggctctttcgattcatgataggttcagctgttatatcataatctttaagtatt 100  Q
    |||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||  |||||||||||||    
T  21150846 ttgatcctgtacatttttgtgggagatgatggttttatgatcctctaggctctttcgattcataataggttcagctgttataccaggatctttaagtatt 21150747  T
Q  101 gtatccctattaggaacaacaccatcagccacatattcagtgttttcttg 150  Q
     ||||||| |||||| | ||| | ||||||||||||||||||||||||||    
T  21150746 atatccctgttaggagctacatcgtcagccacatattcagtgttttcttg 21150697  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 33726654 - 33726502
Alignment:
Q  5 tcctgtactttttggtgggagatgacggttttatgatcctctaggctctttcgattcatgataggttcagctgttatatcataatctttaagtattgtat 104  Q
    ||||||| ||||| | |||||||| ||||||||||||||||| |||||||||||||||  |||||||||||| |||||||| |||| |||||||||||||    
T  33726654 tcctgtagttttttgggggagatgtcggttttatgatcctcttggctctttcgattcacaataggttcagcttttatatcagaatccttaagtattgtat 33726555  T
Q  105 ccc---tattaggaacaacaccatcagccacatattcagtgttttcttgatcc 154  Q
    | |   || ||||| | ||| |||||||||||  |||||| | ||||||||||    
T  33726554 cactagtactaggagctacatcatcagccacagtttcagtttcttcttgatcc 33726502  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 33726424 - 33726344
Alignment:
Q  152 tcctttgggagaaggagaaggatccacttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggtagt 232  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||||||||| |||||||||    
T  33726424 tcctttgggagaaggagaaggatccacttcattaatatctgaagccttctctttgacgggctcattatttggagaggtagt 33726344  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 21150692 - 21150642
Alignment:
Q  178 cttcatgaatatcagaagcattctctttgacaggctcattatttgtagagg 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21150692 cttcatgaatatcagaagcattctctttgacaggctcattatttgtagagg 21150642  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 21140401 - 21140308
Alignment:
Q  24 agatgacggttttatgatcctctaggctctttcgattcatgataggttcagctgttatatcataatc-tttaagtattgtatccctattaggaa 116  Q
    ||||||| |||||||||| |||| ||||||||||||||  ||||| ||||||| ||| |||| |||| ||||||||||||||| ||||||||||    
T  21140401 agatgacagttttatgatactcttggctctttcgattcgcgatagtttcagcttttaaatcagaatcttttaagtattgtatcactattaggaa 21140308  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 234
Target Start/End: Complemental strand, 33714308 - 33714265
Alignment:
Q  191 agaagcattctctttgacaggctcattatttgtagaggtagttg 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33714308 agaagcattctctttgacaggctcattatttgtagaggtagttg 33714265  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 21241737 - 21241798
Alignment:
Q  171 ggatccacttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggtagt 232  Q
    |||| |||||||||||||||||||||||||||||||||||  |||| ||||| |||||||||    
T  21241737 ggatacacttcatgaatatcagaagcattctctttgacagagtcataatttgcagaggtagt 21241798  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 21286971 - 21286911
Alignment:
Q  171 ggatccacttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggtag 231  Q
    ||||||||||||||||||||||||||||||||| ||||||  |||| ||||| ||||||||    
T  21286971 ggatccacttcatgaatatcagaagcattctctatgacagagtcataatttgcagaggtag 21286911  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 21233409 - 21233312
Alignment:
Q  1 ttgatcctgtactttttggtggga-gatgacggttttatgatcctctaggctctttcgattcatgataggttcagctgttatatcataatctttaagt 97  Q
    |||||||| |||||||| | |||| || ||| |||||||||| |||| | ||||| ||||||| ||||| |||| || |||||| | |||||||||||    
T  21233409 ttgatcctttacttttttgggggaagacgacagttttatgatactcttgtctcttacgattcacgatagtttcaacttttatataagaatctttaagt 21233312  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 53912 - 53952
Alignment:
Q  93 taagtattgtatccctattaggaacaacaccatcagccaca 133  Q
    ||||||||||||| ||||||||| ||||| |||||||||||    
T  53912 taagtattgtatcactattaggagcaacatcatcagccaca 53952  T

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